LOC122329080


Basic Information

Item Value
gene id LOC122329080
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18621826 ~ 18623979 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247880.1
CTTTCCCAGAGACGTCAGAAGGAAAGAGAAGGTTATCAGAATCTTAACAGGTCCTCTTTATTTCAGTCCAAAATGCAGGAAGCACGTCTACAGGCTTTATCATAATACCAGAGACTGCACCATCCCTGCATGTGCCCCTGATTTACCCCTGCACATGGAGTTTTAACACAGAAACAGTATAGGCTACAAATTCAGGACTCATCCAGCTGATTATCCAACTCATCCAGCTTTACTCCTGTCCTCAGACTACAAAAGATGTGCGCGACTTCTGACGCGACTGGCGAGGAGTCCGAGATGTCAAGAGGGTTAACTTTACCAGCAGGTCGATGCCAAACCAGAGtgacccagaaaaaaaaaaaacagcagtcaAAGTGCCTTTGGACATGAGAAGAGAATTTAAACCAACACGCAACATTCCACATAATCAGCACATCACGTCCAGAACACTGCTCTGCCTCTCCGGAGAATAGATGTGGGAAAGAATTGATAGAGCAGTAAACGGACACAGTATAATGGGATGCACTTGCCCAAGGACGGTCTGCTGGACTCAGCATGGAGCCAACGTTAAAACACAGGATGACAGAGAAAGAAGACAGAAAACACATCTGGCGCATCGGGTTCTGAACCTGtctgccaaaaaataaaaccattttccATCGTTTCATCACGAAAAAGGGATTGCCATGGTTTCGTGTTTTCTTCTCATCAGATATCGAGACTCGTCACAGTCAGTGCTGATATTTCGTGCGACATGCCTCGATGGGGTTACAACTCAGAGCCGTGATTACAAGTTGTGTTAGTTCGGTACGTTCCAGAGAGAGATTCGCTTTTCTCTGTGCTAGAACTGAAAACCAGTTAACTGCATGAACGTTTCCTTTCGCTTCCGTTTGCCAGCAAACGGGTCGATTTTTGCAGCGAATCCGTGAAAAGCTTTTCGTTTTTGTGCGAGACTGTGAGCGTATGAATGTGGAACATATTCAGTATATTTTGATATGTAAATGTTGCACAAatgagactttaaaaaaaaaaaaaatctgtataacAAACATATAGGCGTCTGACGTACGATGggatgtgtatatttaaaagaaaatatatttaaataaattatgattgTTTAAA

Function

GO:

id name namespace
GO:0032259 methylation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247880.1 True 1122 lncRNA 0.42 4 18621826 18623979

Neighbor

gene id symbol gene type direction distance location
tmem18 tmem18,LOC107714962,LOC107594052,LOC107664181,LOC107697861,LOC107706976,LOC107599622 coding upstream 26142 18593734 ~ 18595684 (+)
LOC122328644 tuba1c,LOC108255233,LOC103148207,LOC102311436,LOC106920718 coding upstream 43086 18575198 ~ 18578740 (+)
jph2 jph2,LOC107707015,LOC107715007,LOC107593978,LOC107697945,LOC107598797,LOC107664110 coding upstream 58684 18547229 ~ 18563142 (+)
mfsd5 mfsd5,LOC107594050,LOC107664134,LOC107599659,LOC107697860,LOC107599644,LOC107706975 coding upstream 86732 18532917 ~ 18535094 (+)
nr1d4a nr1d4a,LOC107715006,LOC107707011,LOC107697943,LOC107593977,LOC107664228,LOC107598823 coding upstream 90324 18516604 ~ 18531502 (+)
fbxo25 fbxo25,LOC107715015,LOC107664196,LOC107697951,LOC107707022 coding downstream 22218 18646197 ~ 18653191 (+)
cmtr1 cmtr1,LOC107715019 coding downstream 50635 18674614 ~ 18689276 (+)
cpne9 cpne9,LOC107706977,LOC107715020,LOC107664104,LOC108432252,LOC108275764 coding downstream 68042 18692021 ~ 18729675 (+)
klf15 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 coding downstream 121043 18745022 ~ 18754478 (+)
G159002 NA non-coding upstream 20650 18600902 ~ 18601176 (+)
G158866 LOC107714908,LOC108433416,LOC107659949 non-coding upstream 51876 18565276 ~ 18569950 (+)
G158880 NA non-coding upstream 76336 18544910 ~ 18545490 (+)
G158830 hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970 non-coding upstream 265292 18296006 ~ 18356534 (+)
G158828 NA non-coding upstream 348334 18273226 ~ 18273492 (+)
G159018 si:ch211-225h24.2,LOC107715017,LOC107594029,LOC107664242,LOC107697952,LOC107707023,LOC107598767 non-coding downstream 29417 18653396 ~ 18655822 (+)
G159034 NA non-coding downstream 114782 18738761 ~ 18738995 (+)
LOC122329216 NA non-coding downstream 132306 18756285 ~ 18763992 (+)
G159107 NA non-coding downstream 352444 18976423 ~ 18989619 (+)
G158789 march9,LOC107664138,LOC107593952,LOC107697857,LOC107714987,LOC107706970,LOC107599679,LOC105912704 other upstream 562909 18057114 ~ 18058917 (+)
camk2n1b camk2n1b,LOC107664141,LOC107714949,LOC107706982,LOC107563146,LOC107599136 other upstream 765292 17811069 ~ 17856534 (+)
snrpg snrpg,LOC107671841,LOC107594056,LOC107598637,LOC107706979 other upstream 1193795 17426733 ~ 17428031 (+)
si:ch211-148l7.4 LOC107715028,LOC107671835,LOC107593999,LOC107697967,LOC107706980 other upstream 1195193 17423120 ~ 17426633 (+)
G158523 NA other upstream 1449987 17105498 ~ 17171839 (+)
fam110c LOC107714930,LOC107664105,LOC107593987 other downstream 17515 18641494 ~ 18644692 (+)
G159081 NA other downstream 147971 18771950 ~ 18789618 (+)
LOC122328754 LOC107715022,LOC107593991,LOC107697954,LOC107664193,LOC564564,LOC107598698,LOC107707027,LOC108432721 other downstream 175593 18799572 ~ 18814653 (+)

Expression


Co-expression Network