trnai-uau_40


Basic Information

Item Value
gene id trnai-uau_40
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 8205123 ~ 8205216 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_2615
GCTCCAGTGGCGCAATCGGTCAGCGCGCGGTACTTATAATGCCGAGGTtgtgagttcgagcctcaccTGGAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_2615 True 74 tRNA 0.59 2 8205123 8205216

Neighbor

gene id symbol gene type direction distance location
trnai-uau_39 NA coding downstream 434 8204596 ~ 8204689 (-)
trnai-uau_38 NA coding downstream 734 8204296 ~ 8204389 (-)
trnai-uau_37 NA coding downstream 2201 8202829 ~ 8202922 (-)
trnai-uau_36 NA coding downstream 2728 8202302 ~ 8202395 (-)
trnai-uau_35 NA coding downstream 3028 8202004 ~ 8202095 (-)
trnai-uau_41 NA coding upstream 207 8205423 ~ 8205516 (-)
LOC122329065 NA coding upstream 349291 8554507 ~ 8557031 (-)
casz1 casz1,LOC107708843,LOC107586525 coding upstream 494609 8699825 ~ 8777258 (-)
pgd pgd,LOC107681986,LOC107586524,LOC107716232,LOC107695776,LOC107570752,LOC107708839 coding upstream 722287 8927503 ~ 8933579 (-)
kif1b kif1b,LOC107681965,LOC107695777,LOC107716234,LOC106522667 coding upstream 729264 8934480 ~ 8997506 (-)
G155737 NA non-coding downstream 27605 8176699 ~ 8177518 (-)
G155698 NA non-coding downstream 231798 7973103 ~ 7973325 (-)
G155669 LOC107747485,LOC107707759,LOC107559486,LOC107690852,LOC107558232,LOC100536777,LOC107681385,LOC108440950 non-coding downstream 352872 7819746 ~ 7852251 (-)
G155684 NA non-coding downstream 368585 7834562 ~ 7836538 (-)
G155670 LOC102294427,LOC107690852,LOC107681385,LOC108440950,LOC107559486,LOC100536777,LOC107747485 non-coding downstream 387752 7766248 ~ 7817371 (-)
G155759 NA non-coding upstream 102063 8307279 ~ 8382607 (-)
G155803 NA non-coding upstream 321186 8526402 ~ 8532927 (-)
G155825 NA non-coding upstream 419710 8624926 ~ 8625642 (-)
G155933 NA non-coding upstream 423483 8628699 ~ 8629103 (-)
LOC122329247 NA non-coding upstream 865168 9070384 ~ 9072944 (-)
G155596 sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663 other downstream 926800 7276448 ~ 7278323 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other downstream 1201600 6994167 ~ 7003523 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other downstream 1223162 6964742 ~ 6981961 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other downstream 1337823 6858007 ~ 6867300 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other downstream 1382091 6766608 ~ 6823032 (-)
G155807 NA other upstream 340178 8545394 ~ 8551977 (-)
G155827 NA other upstream 420542 8625758 ~ 8628391 (-)
c23h1orf127 LOC107708840,LOC107570680 other upstream 707846 8913062 ~ 8919770 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other upstream 716348 8921564 ~ 8926751 (-)
ctnnbip1 ctnnbip1 other upstream 874316 9079532 ~ 9097302 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnai-uau_27 NA coding NC_053132.1 CM020929.1 20345048 ~ 20345141 (-)
striped catfish (Pangasianodon hypophthalmus) trnai-uau_5 NA coding NC_047606.1 CM018552.1 5302113 ~ 5302205 (-)
tiger barb (Puntius tetrazona) trnaa-ugc_74 NA coding NC_056704.1 CM032073.1 13449431 ~ 13449502 (-)
mexican tetra (Astyanax mexicanus) trnai-uau_5 NA coding NC_035901.1 CM008304.1 31211210 ~ 31211302 (-)