trnae-cuc_40


Basic Information

Item Value
gene id trnae-cuc_40
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10902069 ~ 10902140 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_2617
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTCACCGCCGcggcccgggttcgattcccggtcaGGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_2617 True 72 tRNA 0.65 1 10902069 10902140

Neighbor

gene id symbol gene type direction distance location
ptk6b LOC107719912,LOC107672013,LOC107747980,LOC107657056 coding upstream 9524 10884466 ~ 10892545 (+)
srms zgc:194282,srms,LOC107672012,LOC107560891,LOC107657057,LOC107747981,LOC108435233,LOC108276248,LOC107563676 coding upstream 17766 10874824 ~ 10884303 (+)
nol4lb nol4lb,nol4l,LOC107672011,LOC107563666,LOC107657055 coding upstream 31318 10786884 ~ 10870751 (+)
commd7 commd7,LOC107671961,LOC107603136,LOC107747977,LOC107719919,LOC107563668 coding upstream 129870 10765862 ~ 10772199 (+)
LOC122328564 LOC107707753,LOC107672006,LOC107603149,LOC107657067,LOC107559477,LOC107747970 coding upstream 243322 10646963 ~ 10658747 (+)
gid8b gid8b,gid8,LOC107560896,LOC108266002,LOC101169608,LOC108276161,LOC108231957,LOC106566597 coding downstream 32823 10934963 ~ 10938573 (+)
slc17a9b slc17a9b,slc17a9,LOC107563661,LOC107560897,LOC106600547 coding downstream 37255 10939395 ~ 10948900 (+)
rnd1a rnd1a,LOC107657046,LOC107737660,LOC107563659,LOC107560900,LOC107672025,LOC103027302,LOC108435239 coding downstream 138940 11041080 ~ 11049656 (+)
prim1 prim1,LOC107741309,LOC107671973 coding downstream 156019 11058159 ~ 11062247 (+)
naca naca,LOC107737655,LOC107671995,LOC107657042,LOC107563656 coding downstream 166346 11068486 ~ 11075931 (+)
G156496 NA non-coding upstream 246 10829167 ~ 10901823 (+)
G156432 NA non-coding upstream 173839 10727933 ~ 10728230 (+)
G156431 NA non-coding upstream 174905 10726918 ~ 10727164 (+)
G156417 NA non-coding upstream 198976 10702729 ~ 10703093 (+)
G156413 NA non-coding upstream 205511 10696302 ~ 10696558 (+)
G156551 NA non-coding downstream 131651 11033791 ~ 11035495 (+)
G156572 NA non-coding downstream 221952 11124092 ~ 11126634 (+)
G156568 NA non-coding downstream 246723 11148863 ~ 11152047 (+)
G156590 NA non-coding downstream 308901 11211041 ~ 11243036 (+)
G156592 NA non-coding downstream 316895 11219035 ~ 11313603 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other upstream 201174 10698798 ~ 10700895 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other upstream 329823 10563344 ~ 10572246 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other upstream 347349 10551097 ~ 10554720 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other upstream 383318 10514979 ~ 10518751 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other upstream 474907 10415663 ~ 10427162 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other downstream 11764 10913904 ~ 10923988 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other downstream 175014 11077154 ~ 11085604 (+)
G156586 NA other downstream 272281 11174421 ~ 11177033 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other downstream 795274 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other downstream 828840 11730980 ~ 11732361 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnae-cuc-378 NA coding NC_048592.1 CM023246.2 9394563 ~ 9394634 (-)
eurasian perch (Perca fluviatilis) trnae-cuc_31 NA coding NC_053134.1 CM020931.1 2677463 ~ 2677534 (+)
striped catfish (Pangasianodon hypophthalmus) trnae-cuc_42 NA coding NC_047623.1 CM018569.1 3311361 ~ 3311432 (-)
tiger barb (Puntius tetrazona) trnar-ccu_47 NA misc NC_056707.1 CM032076.1 5443231 ~ 5443303 (+)
mexican tetra (Astyanax mexicanus) trnae-cuc_42 NA coding NW_019171900.1 APWO02001498.1 193345 ~ 193416 (+)
mexican tetra (Astyanax mexicanus) trnae-cuc_75 NA coding NW_019171913.1 APWO02001511.1 1170 ~ 1241 (+)