trnaf-gaa_120


Basic Information

Item Value
gene id trnaf-gaa_120
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11515799 ~ 11515871 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_2620
gccgaaatagctcagttgggagagcgttagactgaagatctaaaggtccctggttcgatcccggGTTTCGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_2620 True 73 tRNA 0.53 1 11515799 11515871

Neighbor

gene id symbol gene type direction distance location
trnan-guu_36 NA coding upstream 1953 11513773 ~ 11513846 (+)
trnan-guu_35 NA coding upstream 3101 11512625 ~ 11512698 (+)
fkbpl LOC107672039,LOC107562454,LOC107657000,LOC107712683,LOC107560883 coding upstream 4838 11507968 ~ 11510961 (+)
LOC122328759 cox4i2,LOC107737631,LOC107672030,LOC107560926,LOC107741330 coding upstream 71055 11441897 ~ 11444744 (+)
emp3b emp3b,LOC107562456,LOC107671979,LOC107741326,LOC107737636,LOC107657024,LOC107560919 coding upstream 125513 11387916 ~ 11390286 (+)
trnae-uuc_33 NA coding downstream 2594 11518465 ~ 11518536 (+)
ccdc115 LOC107560885,LOC107737721,LOC107672061,LOC107657017,LOC107562463,LOC107712745 coding downstream 2961 11518832 ~ 11520605 (+)
si:dkey-109j17.5 si:dkey-109j17.5,LOC107672024,LOC107737623,LOC107560927,LOC107562462,LOC107657015,LOC107712743 coding downstream 4879 11520750 ~ 11524868 (+)
apobec2b apobec2b,LOC107737624,LOC107560928,LOC107672022,LOC107657013,LOC107712740 coding downstream 11535 11527406 ~ 11529661 (+)
LOC122328536 LOC107737719,LOC107671965,LOC107560886,LOC107656999,LOC107570275,LOC107712682,LOC101883217 coding downstream 118405 11634276 ~ 11638023 (+)
G156633 NA non-coding upstream 182872 11331742 ~ 11332927 (+)
G156592 NA non-coding upstream 202196 11219035 ~ 11313603 (+)
G156599 NA non-coding upstream 204312 11245551 ~ 11311487 (+)
G156590 NA non-coding upstream 272763 11211041 ~ 11243036 (+)
G156568 NA non-coding upstream 363752 11148863 ~ 11152047 (+)
G156681 NA non-coding downstream 16764 11532635 ~ 11533198 (+)
G156682 NA non-coding downstream 18719 11534590 ~ 11534917 (+)
G156684 NA non-coding downstream 23744 11539615 ~ 11540315 (+)
G156685 NA non-coding downstream 24769 11540640 ~ 11555919 (+)
G156690 fam208ab,LOC107737622,LOC107712737,LOC107570279 non-coding downstream 98259 11614130 ~ 11651107 (+)
G156586 NA other upstream 338766 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 430195 11077154 ~ 11085604 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 591811 10913904 ~ 10923988 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other upstream 814904 10698798 ~ 10700895 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other upstream 943553 10563344 ~ 10572246 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other downstream 181543 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other downstream 215109 11730980 ~ 11732361 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 730322 12246193 ~ 12251982 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 2578207 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 2783830 14299701 ~ 14343274 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnaf-gaa-394 NA coding NW_023493751.1 JAAXML020000463.1 204389 ~ 204461 (-)
eurasian perch (Perca fluviatilis) trnaf-gaa_66 NA coding NC_053121.1 CM020918.1 23373936 ~ 23374008 (-)
striped catfish (Pangasianodon hypophthalmus) trnaf-gaa_28 NA coding NC_047610.1 CM018556.1 11267611 ~ 11267683 (+)
tiger barb (Puntius tetrazona) trnas-uga_29 NA non-coding NC_056702.1 CM032071.1 25949424 ~ 25949505 (+)
mexican tetra (Astyanax mexicanus) trnaf-gaa_28 NA coding NW_019171211.1 APWO02000809.1 3483 ~ 3555 (-)