G15550 (si:ch211-108d22.2)


Basic Information

Item Value
gene id G15550
gene name si:ch211-108d22.2
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 520750 ~ 522672 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU23110
TCAGCTGTGAGATGTAGGGCAGACACTGAAGGAAACTCTtcacttctctctcttcctctgaacATCTTCTCAGATCTactgctttcttctctttctggaGCTTCAGCACTTCCAGGAGGATGGAGATCTTTCTCTCTGAGAGATCTATGATCCATTGATCAGGAGACTGAAATACTGACTGTAATGCTGGAAGATAACTCCTGCCTGTTTGAGTCTCATAGATCTTCACGTGAGAGTAAAGATCCAGCAGGAAATCAGTCtgaacatcATCatcataatgataataaatctCTTCATCAAAAGGGAATGTTTTGTAGCTGCACACAGATAACAGCAGACTGGAGAATCTTGTTCCTGTATTTCTGTCAGTTTCTTCTGCAGCAACACAGAGATTCAGCAGGAATCTGACTGAACACATCCTTTCTTCATCATCAGTG

Function

symbol description
si:ch211-108d22.2 Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within regulation of apoptotic process. Predicted to be located in cytoplasm.

NR:

description
uncharacterized protein si:ch211-108d22.2 isoform X12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23110 True 437 lncRNA 0.28 2 520750 522672

Neighbor

gene id symbol gene type direction distance location
LOC122331907 NA coding upstream 67876 450471 ~ 452874 (+)
LOC122329895 NA coding upstream 227338 289442 ~ 293412 (+)
LOC122331655 NA coding upstream 242518 266330 ~ 278232 (+)
LOC122330203 NA coding upstream 252495 245228 ~ 268255 (+)
LOC122329952 NA coding upstream 301636 215085 ~ 219114 (+)
LOC122332242 NA coding downstream 46652 569324 ~ 571953 (+)
LOC122329695 LOC107574151,LOC107661760,LOC107705958,LOC107574149,LOC107712638,LOC107575271 coding downstream 49266 571938 ~ 610361 (+)
LOC122332267 NA coding downstream 116156 638828 ~ 639299 (+)
LOC122329668 NA coding downstream 177043 699715 ~ 711401 (+)
LOC122330397 NA coding downstream 221281 743953 ~ 753713 (+)
G15546 NA non-coding upstream 40450 478439 ~ 480300 (+)
LOC122330779 NA non-coding upstream 64084 454766 ~ 456666 (+)
G15507 NA non-coding upstream 97852 421535 ~ 422898 (+)
G15527 NA non-coding upstream 152799 361919 ~ 367951 (+)
G15520 NA non-coding upstream 166531 321355 ~ 354219 (+)
G15586 NA non-coding downstream 154394 677066 ~ 678095 (+)
LOC122330711 NA non-coding downstream 173079 695751 ~ 697709 (+)
LOC122330767 NA non-coding downstream 259311 781983 ~ 783076 (+)
LOC122330666 NA non-coding downstream 270578 793250 ~ 815075 (+)
G15592 NA non-coding downstream 294817 817489 ~ 893665 (+)
LOC122331567 NA other upstream 210841 73544 ~ 309909 (+)
LOC122330774 NA other upstream 221429 55175 ~ 299321 (+)
G15563 NA other downstream 31026 553698 ~ 557081 (+)
LOC122330407 NA other downstream 102692 625364 ~ 636239 (+)
LOC122330463 NA other downstream 231758 754430 ~ 775534 (+)
LOC122330135 NA other downstream 483311 1005983 ~ 1009431 (+)
LOC122330066 NA other downstream 524340 1047012 ~ 1051151 (+)

Expression


Co-expression Network