LOC122330703


Basic Information

Item Value
gene id LOC122330703
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 847287 ~ 849709 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU23191
AGTGCTTTCATATAAAGCTGCAACAGAAGCGAAGGGACTTTCCCTAAGCTCTTCCTCCTCAGCGGAAGGACCTTTTTTCACTCATGTGGGGTATAAGGTTTTTCGTGATATATTTGATGTGTCTCGTCTTCAGAGATGTCCGAGAGCAGTTTAGGAAAGAAGGACAGGAAAAGCGCTGCGTCAAAAATGACAagaagtgacagcaaagacaatGTTGTCAACTTTTTGAGCCcgagccaatcagagctcagTGTTCAAGGAGATCTTGTGGCCAGCGACGTGATCTTCATGAGAGGAACGATCAGATCAGATCTGAGAGAAGTGCCACAGAAACACGCCTGAATGCTCCGTCAGATCCGACTCAAACCACACCAGGACTTTATCACACTGAACCAATCAGGGGCGACATTTCAGTTTCACAGATTCGTGAGTcatgatttttgtgttaaagCCTGTCGACTAGAATTGCGTTCTGATGTAAATGAGAAGTTTAGTTTGTTTCATAATAGAAAGAGTGCTGTGGTGTTTCTGACGAATGacgttctgtttgtttttactacTTTTCACTTGAAACAGCTTCCTGTGAGCTGAAAGATTCATTTATCTATGAACCATTCCTCAATAGTCTGCTGTATTTGATTGTATTCATATATCATTTGTTTCATGTATGTTCTTAATTGTTGGTCCTTTTTGTTGCACTGTTGaatgggaaaataaaataaagcatttccaACACAAGCTTATCTTTATTGGTTTTATATTTGACAACGTTGTTTTGCTCCAGATCTCCTCGTGTGTGAAGATAATGCATGAGTAAAGTTGTGGTGAAATGAGTCATATACAGTCCTGTTCAGCCGTGACCGGTGTCTGGTGAGGTCTGATCACTTCTTCTCTTAAAGACCGAACAGACTGAGGAGCAGAAACACTCACCCGCAGGTAAGACATGCTTCAAGTCTGAGAGGAAAACCAGCTTCTGAGAATCAGAGAGAAGGGGAGCGTGCAGATGGaactggaatatatatatataaactgtattgatatcgttgttgttgttatcaGCATGGAATCAGAAGGTGtctgtatgttgttgttgttacttGGATAGTCTTTAGATGCAGTGCACATGTTGTTTatagtttatgtattttacaca
>TU23192
AGTGCTTTCATATAAAGCTGCAACAGAAGCGAAGGGACTTTCCCTAAGCTCTTCCTCCTCAGCGGAAGGACCTTTTTTCACTCATGTGGGGTATAAGAGATGTCCGAGAGCAGTTTAGGAAAGAAGGACAGGAAAAGCGCTGCGTCAAAAATGACAagaagtgacagcaaagacaatGTTGTCAACTTTTTGAGCCcgagccaatcagagctcagTGTTCAAGGAGATCTTGTGGCCAGCGACGTGATCTTCATGAGAGGAACGATCAGATCAGATCTGAGAGAAGTGCCACAGAAACACGCCTGAATGCTCCGTCAGATCCGACTCAAACCACACCAGGACTTTATCACACTGAACCAATCAGGGGCGACATTTCAGTTTCACAGATTCGTGAGTcatgatttttgtgttaaagCCTGTCGACTAGAATTGCGTTCTGATGTAAATGAGAAGTTTAGTTTGTTTCATAATAGAAAGAGTGCTGTGGTGTTTCTGACGAATGacgttctgtttgtttttactacTTTTCACTTGAAACAGCTTCCTGTGAGCTGAAAGATTCATTTATCTATGAACCATTCCTCAATAGTCTGCTGTATTTGATTGTATTCATATATCATTTGTTTCATGTATGTTCTTAATTGTTGGTCCTTTTTGTTGCACTGTTGaatgggaaaataaaataaagcatttccaACACAAGCTTATCTTTATTGGTTTTATATTTGACAACGTTGTTTTGCTCCAGATCTCCTCGTGTGTGAAGATAATGCATGAGTAAAGTTGTGGTGAAATGAGTCATATACAGTCCTGTTCAGCCGTGACCGGTGTCTGGTGAGGTCTGATCACTTCTTCTCTTAAAGACCGAACAGACTGAGGAGCAGAAACACTCACCCGCAGGTAAGACATGCTTCAAGTCTGAGAGGAAAACCAGCTTCTGAGAATCAGAGAGAAGGGGAGCGTGCAGATGGaactggaatatatatatataaactgtattgatatcgttgttgttgttatcaGCATGGAATCAGAAGGTGtctgtatgttgttgttgttacttGGATAGTCTTTAGATGCAGTGCACATGTTGTTTatagtttatgtattttacaca
>XR_006248066.1
ATGtgattgtttattatttcactTATACTTTTAGTTTTGGGTATTTTAGGCTTATGACCTTTCAGAGTTGTGTATCTTTTGACTGGTAAAAAGCGACTAGAACAAACGTCatcaaaagagagagaggcgtCACTCGTCCTCTGACTCAACCCTGTTTCGTTTTCAGACTGAGAAGtctgaaatattataatattatattataaaaagtttatattataaaagtCTAATCCTATtaacgagtgtgtgtgtgagagtagtTCTACAGTCAtctaatgtaaaagtaaaagtgaaaGTATCAGgcttttttgatttaaaacaaagtgCATTTTTGAGTGCATATTATCCCCTAAACTCGtcaaaaattgaataaataaaaatgatgaaaccGTTAACGTGGTTTAATATACGAAGATTGCAAACGCAACACAAAACATGTTATGATACTGTATATTAGAGCTGTACCCTATATAAATATGCTGACTCACTGGAAAATACACTGAGGTTGTTGGGAATTCTGGCTGAAATCTACTGATAAACACGAGAATCATTCGAACTGATGAATATTGTAGAACTCTGCTGCTTTGCACTCCCACACAGGTTTTTCGTGATATATTTGATGTGTCTCGTCTTCAGAGATGTCCGAGAGCAGTTTAGGAAAGAAGGACAGGAAAAGCGCTGCGTCAAAAATGACAagaagtgacagcaaagacaatGTTGTCAACTTTTTGAGCCcgagccaatcagagctcagTGTTCAAGGAGATCTTGTGGCCAGCGACGTGATCTTCATGAGAGGAACGATCAGATCAGATCTGAGAGAAGTGCCACAGAAACACGCCTGAATGCTCCGTCAGATCCGACTCAAACCACACCAGGACTTTATCACACTGAACCAATCAGGGGCGACATTTCAGTTTCACAGATTCGTGAGTcatgatttttgtgttaaagCCTGTCGACTAGAATTGCGTTCTGATGTAAATGAGAAGTTTAGTTTGTTTCATAATAGAAAGAGTGCTGTGGTGTTTCTGACGAATGacgttctgtttgtttttactacTTTTCACTTGAAACAGCTTCCTGTGAGCTGAAAGATTCATTTATCTATGAACCATTCCTCAATAGTCTGCTGTATTTGATTGTATTCATATATCATTTGTTTCATGTATGTTCTTAATTGTTGGTCCTTTTTGTTGCACTGTTGaatgggaaaataaaataaagcatttccaACACAAGCTTA
>XR_006248067.1
CACTCATGTGGGGTATAAGGTTTTTCGTGATATATTTGATGTGTCTCGTCTTCAGAGATGTCCGAGAGCAGTTTAGGAAAGAAGGACAGGAAAAGCGCTGCGTCAAAAATGACAagaagtgacagcaaagacaatGTTGTCAACTTTTTGAGCCcgagccaatcagagctcagTGTTCAAGGAGATCTTGTGGCCAGCGACGTGATCTTCATGAGAGGAACGATCAGATCAGATCTGAGAGAAGTGCCACAGAAACACGCCTGAATGCTCCGTCAGATCCGACTCAAACCACACCAGGACTTTATCACACTGAACCAATCAGGGGCGACATTTCAGTTTCACAGATTCGTGAGTcatgatttttgtgttaaagCCTGTCGACTAGAATTGCGTTCTGATGTAAATGAGAAGTTTAGTTTGTTTCATAATAGAAAGAGTGCTGTGGTGTTTCTGACGAATGacgttctgtttgtttttactacTTTTCACTTGAAACAGCTTCCTGTGAGCTGAAAGATTCATTTATCTATGAACCATTCCTCAATAGTCTGCTGTATTTGATTGTATTCATATATCATTTGTTTCATGTATGTTCTTAATTGTTGGTCCTTTTTGTTGCACTGTTGaatgggaaaataaaataaagcatttccaACACAAGCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23191 False 1153 lncRNA 0.41 3 847287 849709
TU23192 False 1117 lncRNA 0.41 3 847287 849709
XR_006248066.1 True 1243 lncRNA 0.37 2 847391 849299
XR_006248067.1 False 665 lncRNA 0.40 3 847365 849299

Neighbor

gene id symbol gene type direction distance location
LOC122330100 NA coding upstream 842 844603 ~ 846445 (+)
LOC122332312 NA coding upstream 54619 783410 ~ 792668 (+)
LOC122330397 NA coding upstream 93574 743953 ~ 753713 (+)
LOC122329668 NA coding upstream 135886 699715 ~ 711401 (+)
LOC122332267 NA coding upstream 207988 638828 ~ 639299 (+)
LOC122330251 NA coding downstream 161602 1011311 ~ 1013643 (+)
LOC122332569 NA coding downstream 167998 1017707 ~ 1019352 (+)
LOC122332610 NA coding downstream 185543 1035252 ~ 1045858 (+)
LOC122330262 LOC107561206,LOC107727046,LOC107679474 coding downstream 212567 1062276 ~ 1064324 (+)
LOC122330011 NA coding downstream 229224 1078933 ~ 1084889 (+)
G15601 LOC107574600 non-coding upstream 9525 832259 ~ 837762 (+)
LOC122330666 NA non-coding upstream 32212 793250 ~ 815075 (+)
LOC122330767 NA non-coding upstream 64211 781983 ~ 783076 (+)
LOC122330711 NA non-coding upstream 149578 695751 ~ 697709 (+)
G15586 NA non-coding upstream 169192 677066 ~ 678095 (+)
G15607 NA non-coding downstream 307 850016 ~ 852679 (+)
LOC122330733 NA non-coding downstream 25538 875247 ~ 890906 (+)
G15803 NA non-coding downstream 105798 955507 ~ 955804 (+)
G15806 NA non-coding downstream 109870 959579 ~ 960094 (+)
G15833 NA non-coding downstream 219980 1069689 ~ 1070138 (+)
LOC122330463 NA other upstream 71753 754430 ~ 775534 (+)
LOC122330407 NA other upstream 211048 625364 ~ 636239 (+)
G15563 NA other upstream 290206 553698 ~ 557081 (+)
LOC122331567 NA other upstream 537378 73544 ~ 309909 (+)
LOC122330774 NA other upstream 547966 55175 ~ 299321 (+)
LOC122330135 NA other downstream 156274 1005983 ~ 1009431 (+)
LOC122330066 NA other downstream 197303 1047012 ~ 1051151 (+)
G15939 NA other downstream 441260 1290969 ~ 1291564 (+)
G15955 NA other downstream 541030 1390739 ~ 1392850 (+)
LOC122330032 LOC107674481,LOC107727039,LOC107711806,LOC107563760 other downstream 546138 1395847 ~ 1408926 (+)

Expression


Co-expression Network