G16002 (pick1,LOC107734822,LOC107734770)


Basic Information

Item Value
gene id G16002
gene name pick1,LOC107734822,LOC107734770
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1619312 ~ 1865229 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU23769
gaacatttaaaaatgtcaaaaatactgGTACACTATACTGGTAATAGTGTGAAAGTGAGCcaaaaccactgtgtgtgttgtgtgtgtttcaggcgtTGGGTGACCCGGCTGTACGCGTCAGCACCGGGAACTACGAGTACCGCTTGATCTTGCGCTGTCGACAGGAAGCCCGCAAGGCATCTTCGCTAAGATGCGCAAAGACGTCCTGGAGAAGATCGAACTCCTGGACCAGAAACATGTCCAGGACATTGTGTTCCAGCTGCAGCGCTTCGTCTCGGGATGTCGCGACTATTACGACGACTGCTACGCCGTGCTGAAAGAGGCTGACGTGTTCCCCATCGAGGTGGATCTGTCCCGGACCATGATCAACTACGGCGGGCAGAGTCTCTCctacgaggaggaggaggaggacgaggaagaCACGGGCCGAGGAGGAGAAGACGGAGCTCCATGAGACTGAGAACGGAGCGCAGAAACTCATCGACGACGAGTGAATTATCAGATGAAATAAGAAATCAATGAAGGATGAGAGAGTATGTTCAGGTAGGATGATcgataaatacaaataaaagcattatatattacatatttatatatatgatatttaatatagCAATTCTTTATTGATAAACTACACATTCAAATGACTGGGCAGACAGGAAGTGAATAGCTGGTTGCCGTGTTACATACTTTAGAATAGAATGTTACCTTTGGTTACTATGGTAACAGAATTCAAAATTTCAGACAAACATTCTTTATTTGAAGTCttggcacttttttttgtttttcataacaTTTCAAACGAAGGGGACCTGAAATTGAGTTGTCAATGTGGATTTGCACAACTTTGTGaggtttttctctcttttttgcctttaaaacactggatgaatgtttttgagctcttgttttgttgtttgggTGTAATTTAATGTGATGGTGTTACTGTGGTTTGTGTACATAAAGGTTTGAAGAAGAAAGATGCTTGTGAAATGggtgaaaaatgtaaatcagaTTTGTTTTATGGGCTTTCTCATTAAACGTGTCGAGGTTCAGGAA
>TU23770
AGGATGAGAGAGTATGTTCAGGTAGGATGATcgataaatacaaataaaagcattatatattacatatttatatatatgatatttaatatagCAATTCTTTATTGATAAACTACACATTCAAATGACTGGGCAGACAGGAAGTGAATAGCTGGTTGCCGTGTTACATACTTTAGAATAGAATGTTACCTTTGGTTACTATGGTAACAGAATTCAAAATTTCAGACAAACATTCTTTATTTGAAGTCttggcacttttttttgtttttcataacaTTTCAAACGAAGGGGACCTGAAATTGAGTTGTCAATGTGGATTTGCACAACTTTGTGaggtttttctctcttttttgcctttaaaacactggatgaatgtttttgagctcttgttttgttgtttgggTGTAATTTAATGTGATGGTGTTACTGTGGTTTGTGTACATAAAGGTTTGAAGAAGAAAGATGCTTGTGAAATGggtgaaaaatgtaaatcagaTTTGTTTTATGGGCTTTCTCATTAAACGTGTCGAGGTTCAGGAA

Function

symbol description
pick1 Predicted to enable phospholipid binding activity and protein kinase C binding activity. Predicted to be involved in several processes, including dendritic spine maintenance; positive regulation of receptor internalization; and regulation of Arp2/3 complex-mediated actin nucleation. Predicted to be located in several cellular components, including cytoskeleton; perinuclear region of cytoplasm; and synapse. Predicted to be active in several cellular components, including cytoplasmic vesicle; postsynaptic density; and trans-Golgi network membrane. Orthologous to human PICK1 (protein interacting with PRKCA 1).

NR:

description
PREDICTED: PRKCA-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23769 True 1059 TUCP 0.44 3 1619312 1865229
TU23770 False 537 lncRNA 0.40 2 1619907 1865229

Neighbor

gene id symbol gene type direction distance location
LOC122329650 NA coding upstream 17658 1590678 ~ 1601654 (+)
LOC122329645 NA coding upstream 39491 1567345 ~ 1579821 (+)
cdc42ep1b LOC107579628,LOC107711548,LOC107711549 coding upstream 53370 1558351 ~ 1565942 (+)
LOC122329687 NA coding upstream 93836 1517508 ~ 1525476 (+)
LOC122329679 NA coding upstream 102901 1508493 ~ 1516411 (+)
LOC122330213 plbd1,LOC107563730,LOC107572281,LOC107672894 coding downstream 2395 1867624 ~ 1870610 (+)
LOC122333258 LOC107575253,LOC107595184,LOC107748256,LOC107740842,LOC107718680 coding downstream 60518 1925747 ~ 1941793 (+)
rangap1a rangap1,rangap1a,LOC107745514,LOC107722837 coding downstream 137450 2002679 ~ 2010431 (+)
si:ch211-106h11.3 LOC107691099,LOC107708266,LOC107755605,LOC107563746,LOC107672933,LOC107574113 coding downstream 265989 2131218 ~ 2140821 (+)
LOC122341668 LOC107755616,LOC107672923 coding downstream 396381 2261610 ~ 2267508 (+)
G16004 NA non-coding upstream 3783 1615160 ~ 1615529 (+)
G15944 NA non-coding upstream 128533 1485571 ~ 1490779 (+)
G15972 NA non-coding upstream 177570 1441259 ~ 1441742 (+)
G15967 NA non-coding upstream 204113 1414215 ~ 1415199 (+)
LOC122330682 NA non-coding upstream 234418 1383248 ~ 1384894 (+)
G16017 NA non-coding downstream 6051 1871280 ~ 1891027 (+)
LOC122330717 NA non-coding downstream 77460 1942689 ~ 1943729 (+)
G16233 NA non-coding downstream 163165 2028394 ~ 2030843 (+)
G16243 LOC107755616,LOC107672923 non-coding downstream 178422 2043651 ~ 2046384 (+)
G16226 NA non-coding downstream 184956 2050185 ~ 2056000 (+)
LOC122330032 LOC107674481,LOC107727039,LOC107711806,LOC107563760 other upstream 210386 1395847 ~ 1408926 (+)
G15955 NA other upstream 226462 1390739 ~ 1392850 (+)
G15939 NA other upstream 327748 1290969 ~ 1291564 (+)
LOC122330066 NA other upstream 568161 1047012 ~ 1051151 (+)
LOC122330135 NA other upstream 609881 1005983 ~ 1009431 (+)
trnar-ccu_2 NA other downstream 484 1865713 ~ 1865785 (+)
G16222 LOC107751969,LOC107745511,LOC107572814,LOC107672897 other downstream 159119 2024348 ~ 2320138 (+)
G16223 txn2,LOC107745512 other downstream 246808 2112037 ~ 2114339 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other downstream 295117 2160346 ~ 2165693 (+)
G16347 NA other downstream 702855 2568084 ~ 2568999 (+)

Expression


Co-expression Network