G16008


Basic Information

Item Value
gene id G16008
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1689042 ~ 1704676 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU23788
cagcaatgttttttttctacaaatttGGAAATCACTTTACAGGGAGGTTGATATacttgatgatgatgatgattattattattattattattattatcatgtgtTTCCCCTCCACTGTGACTCTCTGAGGCGTGGACCTGCAGCAGAGCCGATGTCTCGGGTCTGAACTCTGACTCACTCTGAGATGTGCAGGAAGATGTCCTCCCCGCCGTGAGCCGGCCTGATGTGTCCGTGACCCTGCGACCTCGAGAAGTCTTTACACACGCCCTTGAAGACGGGCCCCGCGTTCGCCCGGACGCTcctgcagacacacagagacggAGACTTCATCGACCGAAGTTCAGCTCACAGGTTCCCTAGAAACGTTAGTTTTCGGTTCCCGCAACATTCCCCGGGAAGGTTATGTTCGGAGAACGTTTCGGGAACGTTGCGACTGACTTACGCAGAGTACGTGCGCATGCGCTTGGTGGGCAGCGGGCTCGAGAGCTCCCCGGCTCGTTCCCAGACGCGGCTGCCTTCTCGCGGGAACGGGAACGACAGCGACAGCGGCGGGGAGCGCGGAGACGGGTCCGGTTCCGCCATGATCACCGGAAGAAGACCTGTGAGGAGACACTGAAGTCACATCACGTCCCGCGCGGGTTATGAAGGGCGTTAGCGACGTGCAGTTAAACATTtagtcttctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtttataacatttattataaaaaaaactataaagagagaaaatgagaaaaagaaatatataaaaaaagttaaatttatttaaaacggcAATTAGACTACTAAAATCCATAAACACTGGAAgcacattattattttccaccatttaaaaaaagaaaactaaatttgaaaacccatgaaaaacaacaacaatactcTAGCGATGCTAAAGCTGCTTCTACTAGAGGACTCAAACAAATCATGCTCACGCCACAATGCTTTTaccaatgcaaaaatgtatctaaaaatgcattattattactttaataattcGTTAAAAATGCGATAATGAATGCATCATTggtaagaacaaaaaaaaaaacatttacggAGAAATTTGTTACCCTTTTCTTTTAAGTAATGCTGAGCTGCCCGActaaaaaatttgtttaaaattattaaagaaaaataagacgCTCGTTAGAAATCTCTAATCTGAGGTAAAGATGAATCGCACATTATTGCCTGGATTAAACCCTGAAAACAAACCAGTCGTTAGACTCGCCTTAAATGAATCGTCCAGTTGACTGCCGTGAAGATGCGTTTGAACGTGTGTTAAAAATCTGCACGATAGAAATATATCGCTTTTTACACGGTAAGGTCATCCCGGAAGAACAGCGACACTAGTGGACGGACACAAGCGTGTATTTACAGACGCGCCTTTCTTCCGAATCTTCGCGAACCGCCACTCTCCGATCCGCGCCTACCCTAGAAGTGCTCTCGATGTCGCAGAGCGAAGAAAACGCCTGCTTCGTGTCGAGGGTCATGCGCttgttttatacaaaaaaaactcgAACACAgacaaagtgcaaaaaaaaggaCGAAACGGGTTAAAAAGTAGCCGAAAACAGTCAAAAAGTCGCGTTTTTCGCGACGAAACGCTCTCGGGGTGAACGCTAACCCGCCGTCCGCCCACGATTTTTCCAGTCGGCCGCATTATCTCGTCTTCATACTGAATGAACCTCTAAAAACTCGCTGCTCGGGTCGCGTGGGGGTCGTGGAGAGGGCAGGATGAGGTATgaggaggtcagaggtcaaaggttaTGCTGTGTTGTCGTGTGTTTTGCGTCGTCCAGACCCTTAAAACGTCCTCCTGAATAAACACGCGCTCGCGTCGCTCTCGTCCGCTTCCCCCCGCGCGGCGCCGCATTACCCACAATCCCCGGCCGTGTAACTGCGGTGTGAATTATAAGGGAGACTGATGCGTGTCGGGGCGAAGCGCGTCCCTCACAGCGAGCCGTATTTGGCTTCGTACAGCGACATGATCTTCTTGCAGCGGCCGCAGTCTTTGCGCAGCTCGGCCACTTCCTGTCGCAGCGCGGCGTTTTCCCGCTCCAGGAAGGAGGCGCGCACGGCGATCTGGTTCTCTTTCAGGCGCCGGGCGTCGCGAGAGCGCTTCGCCGCCACGTTGTTCTTCTTCCTCCGCGACCAGTACTTCTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23788 True 2195 lncRNA 0.45 2 1689042 1704676

Neighbor

gene id symbol gene type direction distance location
LOC122330255 pmm1,LOC107672914,LOC107691086,LOC100007686 coding upstream 2065 1680314 ~ 1686977 (+)
LOC122330554 NA coding upstream 25444 1660521 ~ 1663598 (+)
LOC122329650 NA coding upstream 87388 1590678 ~ 1601654 (+)
LOC122329645 NA coding upstream 109221 1567345 ~ 1579821 (+)
cdc42ep1b LOC107579628,LOC107711548,LOC107711549 coding upstream 123100 1558351 ~ 1565942 (+)
LOC122329718 LOC107575253,LOC107595184,LOC107748256,LOC107740842,LOC107718680 coding downstream 6619 1711295 ~ 1727693 (+)
LOC122332958 NA coding downstream 23694 1728370 ~ 1729997 (+)
LOC122330213 plbd1,LOC107563730,LOC107572281,LOC107672894 coding downstream 162948 1867624 ~ 1870610 (+)
LOC122333258 LOC107575253,LOC107595184,LOC107748256,LOC107740842,LOC107718680 coding downstream 221071 1925747 ~ 1941793 (+)
rangap1a rangap1,rangap1a,LOC107745514,LOC107722837 coding downstream 298003 2002679 ~ 2010431 (+)
G16004 NA non-coding upstream 73513 1615160 ~ 1615529 (+)
G15944 NA non-coding upstream 198263 1485571 ~ 1490779 (+)
G15972 NA non-coding upstream 247300 1441259 ~ 1441742 (+)
G15967 NA non-coding upstream 273843 1414215 ~ 1415199 (+)
LOC122330682 NA non-coding upstream 304148 1383248 ~ 1384894 (+)
G16027 LOC107691092,LOC107572810,LOC107722836 non-coding downstream 66081 1770757 ~ 1979709 (+)
G16028 NA non-coding downstream 72310 1776986 ~ 1989269 (+)
LOC122330751 NA non-coding downstream 120114 1824790 ~ 1826317 (+)
G16033 NA non-coding downstream 150219 1854895 ~ 1855684 (+)
G16017 NA non-coding downstream 166604 1871280 ~ 1891027 (+)
trnar-ccu_1 NA other upstream 38314 1650656 ~ 1650728 (+)
G16003 pick1,LOC107734822,LOC106607154 other upstream 39548 1559387 ~ 1649494 (+)
trnar-ccu plbd1,LOC107563730 other upstream 65648 1620923 ~ 1623394 (+)
LOC122330032 LOC107674481,LOC107727039,LOC107711806,LOC107563760 other upstream 280116 1395847 ~ 1408926 (+)
G15955 NA other upstream 296192 1390739 ~ 1392850 (+)
trnar-ccu_2 NA other downstream 161037 1865713 ~ 1865785 (+)
G16222 LOC107751969,LOC107745511,LOC107572814,LOC107672897 other downstream 319672 2024348 ~ 2320138 (+)
G16223 txn2,LOC107745512 other downstream 407361 2112037 ~ 2114339 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other downstream 455670 2160346 ~ 2165693 (+)
G16347 NA other downstream 863408 2568084 ~ 2568999 (+)

Expression


Co-expression Network