G16227


Basic Information

Item Value
gene id G16227
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2314300 ~ 2374078 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU24142
CTCTCCccgtgtggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagctaaTGTAAAGCGCGTCCGCTGCCGTTCTTACAAAGCTGCTCGCGCTTAGCGGCTTCTTGTCCTGAGCCGCAGCAGAGCTCTTCGTCTTCTCCTCGCCCTCgccctctctcttcctcttctcctcctcctccatcttcTTCTTAAAGAGCTCCATGAAGCTGCCGTCGTTGGCGAAGGCGTTGGCCGCTTTGGGCGCCCCGTGAGCCGGGCTGCTGCCGCCGGACTccccgctgctgctgctggaggactggtggtggtggtgatggtgatgatgatggcgGTGATGTTTGTCAGATTTATGCTGCTTTTTCTCCATCGTTTTACCGTTCGGTGAAGtaataaatacagccttcacATTCACTCCCGCGGTGTTCTTATTTCTGCACCGAAGCCACGGCTTGcggtttaatgaataaaaaacaaaactcgcatgtattttaaatgcgcACACGCGTAATACAGgtgaaaatgaaagaataataCGTTAGCTCGCCCCGTTGCGGGATCGTGAAGCGTCGCGGCGAAACAAAAACACCGCCGTCGACGAACAGAAAGCGCGCGGTTGTCGAGCCGCGGGAGCGAGCGTGTTCGTGATCGCACACCGGCCGGATTGAGCGTGAATCGGCAGGATTTCGTGGTTTTGTCCCGATGTTTTTCGCACAGGTTTGTTGTATTTTAGCGTCGCTCCGCCATACTTCATTTCATCTGCGGTCCGCTC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24142 True 794 lncRNA 0.54 2 2314300 2374078

Neighbor

gene id symbol gene type direction distance location
LOC122333376 NA coding upstream 18255 2293303 ~ 2296045 (+)
LOC122341669 LOC107745245,LOC107575245,LOC107755608,LOC107672924 coding upstream 43836 2267588 ~ 2270464 (+)
LOC122341668 LOC107755616,LOC107672923 coding upstream 46792 2261610 ~ 2267508 (+)
si:ch211-106h11.3 LOC107691099,LOC107708266,LOC107755605,LOC107563746,LOC107672933,LOC107574113 coding upstream 173479 2131218 ~ 2140821 (+)
rangap1a rangap1,rangap1a,LOC107745514,LOC107722837 coding upstream 303869 2002679 ~ 2010431 (+)
junbb junbb,LOC107741351,LOC107567221,LOC107568144,LOC107696348,LOC107726104 coding downstream 47993 2422071 ~ 2423550 (+)
mast1b mast1b,LOC107741348,LOC107677342,LOC107571949,LOC107696309,LOC107567212 coding downstream 75397 2449475 ~ 2474998 (+)
LOC122341595 NA coding downstream 123905 2497983 ~ 2501016 (+)
atg4db LOC107677346,LOC107696340,LOC107751629,LOC107571953,LOC107741356 coding downstream 127510 2501588 ~ 2509106 (+)
evplb evplb,LOC107741346,LOC107677338,LOC107567223,LOC107696334,LOC107751618 coding downstream 139143 2513221 ~ 2542538 (+)
G16240 NA non-coding upstream 12172 2242286 ~ 2302128 (+)
LOC122341670 NA non-coding upstream 59645 2253829 ~ 2254655 (+)
G16239 NA non-coding upstream 69368 2243357 ~ 2244932 (+)
G16246 NA non-coding upstream 71165 2192086 ~ 2243135 (+)
G16218 ddx39ab,LOC107563749,LOC107755611,LOC107672936,LOC107708265,LOC107691101,LOC107563747 non-coding upstream 163815 2143869 ~ 2150485 (+)
G16327 LOC107741352,LOC107677336,LOC107567222,LOC107568146,LOC107696350 non-coding downstream 52330 2426408 ~ 2434512 (+)
G16337 sphk1,LOC107741344,LOC107677335,LOC107751628,LOC107696311,LOC107571948 non-coding downstream 142434 2516512 ~ 2546903 (+)
G16344 NA non-coding downstream 190410 2564488 ~ 2565843 (+)
G16358 NA non-coding downstream 227760 2601838 ~ 2602537 (+)
G16357 NA non-coding downstream 257717 2631795 ~ 2634380 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other upstream 148607 2160346 ~ 2165693 (+)
G16223 txn2,LOC107745512 other upstream 199961 2112037 ~ 2114339 (+)
trnar-ccu_2 NA other upstream 448515 1865713 ~ 1865785 (+)
G16002 pick1,LOC107734822,LOC107734770 other upstream 449071 1619312 ~ 1865229 (+)
G16347 NA other downstream 194006 2568084 ~ 2568999 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 267068 2641146 ~ 2646756 (+)
G16530 LOC107601546 other downstream 908912 3282990 ~ 3283656 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other downstream 946742 3320820 ~ 3323054 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other downstream 1135998 3510076 ~ 3526914 (+)

Expression


Co-expression Network