LOC122333054 (LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908)


Basic Information

Item Value
gene id LOC122333054
gene name LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2160346 ~ 2165693 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU24191
TGGACTGAAAGTGGCGCCGGTTGGCACACGGACGGCGGTGATGCCCGAAGGAGCAGATTTACCAGCCGTCCTGATTCGAGTCTGGTGAGGACACATCAGAAAACTCTCGAACTTCCTGTAGCAGCTTTAGAACTGGATCGCAACTCTCACAACCAGACGCATCTGCATCGCCCGCCGCCGGACCTCCGAGGATCGTAACCCGACCTCGTCTGTCGTGGCTTCAGTCCTCCGCTTCTGAAATGCCACGATCTTTTCTAGTGAAAAGCAAGAGGGCGGGGCATCACTCCACACGCTCCGCCCACTCTCAGCACGGACGTCATGACGGACGGGCGTCCAGCTGTCACTCCACGGCTCTGGAGCTGCTGCCCGGCTCATCCACCGACAGCAGTCGAGCCCAGAACAGCCCCGAGGGAGCCGGAGGTGAACCTCGACCCTGGCCCTCATCCACTGCAGGCGAGCAGTCTGGAGGTTGTCCGTTTTCTACCCTGTCCTGCTCTGCTGCGGTGGAGAGACAGAGCGAGCTGGAGCGACTGATTCAGGCTTTACTCAGCCACCATCAGCTGAGCAACGTCCAGACGCCGCTGTGTGGATGTCCACTCTGTGAGAAGCTCCTGTCCTCTGCTGTGGGTTTGACATCGCACTTGTGCAAGTCACATGTCAACAGGGCTGCTCTCCCATTGGCCGGATCCTCGGGCCACGCCCAACAGCCTTATGGGTACAAAAATACAGGAGTACTCAGGGAGCGGAGCTTTGTCTGTAAGGTTTGTGGGAAGGTGTTTAAGAGGTCGTCGACTCTCTCCACACACCTGCTCATTCACTCGGACACGCGGCCGTTCCCGTGTCCCTACTGCGGAAAGAGATTCCACCAGAAGTCTGATATGAAGAAACATACGTTCATACACACAGGTGAGAAGCCTCATGTGTGCGTGGTGTGTGGTAAAGCGTTCAGTCAGAGCTCCAATCTGATCACTCACAGCAGAAAGCACAGCAGCTACCAGCCGTTCAGCTGCTCGCA
>XM_043230556.1
AGATGAAAGAAACTCAtgcgggtttggaacaactcgCATAAAAATCAGTTCATTTCGACGAATGTCTTCAATCATTCATCTCCGAGAAAGAACGATGTAATTATTGCATTGTTGAGGTTGAGATCACTTACTTAACCTACACGTTTCCTCCAGACTTTGATATCTGAAGATTTCAAACATCTCAAAGGTTCTGAATGCCAACGTTTGAGAATGTTCTTAAAAGATGAGCTTCAGTAGAACAATGTTTGATTCTAACTTTGAGATGGCCTCGCCAGAATATTCAAAAGACATTTCCTGTTAGCTGCTGGTGACTCATTTATTGCTCCCGATGAACTGTGGGAGAAACGTTCGATGCTTCGAAACGCGATTCACATACATCTTGAGAATTCGAGAGATTTATTTATGCGCTTTGGACTGAAAGTGGCGCCGGTTGGCACACGGACGGCGGTGATGCCCGAAGGAGCAGATTTACCAGCCGTCCTGATTCGAGTCTGGTGAGGACACATCAGAAAACTCTCGAACTTCCTGTAGCAGCTTTAGAACTGGATCGCAACTCTCACAACCAGACGCATCTGCATCGCCCGCCGCCGGACCTCCGAGGATCGTAACCCGACCTCGTCTGTCGTGGCTTCAGTCCTCCGCTTCTGAAATGCCACGATCTTTTCTAGTGAAAAGCAAGAGGGCGGGGCATCACTCCACACGCTCCGCCCACTCTCAGCACGGACGTCATGACGGACGGGCGTCCAGCTGTCACTCCACGGCTCTGGAGCTGCTGCCCGGCTCATCCACCGACAGCAGTCGAGCCCAGAACAGCCCCGAGGGAGCCGGAGGTGAACCTCGACCCTGGCCCTCATCCACTGCAGGCGAGCAGTCTGGAGGTTGTCCGTTTTCTACCCTGTCCTGCTCTGCTGCGGTGGAGAGACAGAGCGAGCTGGAGCGACTGATTCAGGCTTTACTCAGCCACCATCAGCTGAGCAACGTCCAGACGCCGCTGTGTGGATGTCCACTCTGTGAGAAGCTCCTGTCCTCTGCTGTGGGTTTGACATCGCACTTGTGCAAGTCACATGTCAACAGGGCTGCTCTCCCATTGGCCGGATCCTCGGGCCACGCCCAACAGCCTTATGGGTACAAAAATACAGGAGTACTCAGGGAGCGGAGCTTTGTCTGTAAGGTTTGTGGGAAGGTGTTTAAGAGGTCGTCGACTCTCTCCACACACCTGCTCATTCACTCGGACACGCGGCCGTTCCCGTGTCCCTACTGCGGAAAGAGATTCCACCAGAAGTCTGATATGAAGAAACATACGTTCATACACACAGGTGAGAAGCCTCATGTGTGCGTGGTGTGTGGTAAAGCGTTCAGTCAGAGCTCCAATCTGATCACTCACAGCAGAAAGCACAGCAGCTACCAGCCGTTCAGCTGCTCGCACTGTCCCCTCAGCTTCCAGAGGAGACTGGACCTGCAGCGCCACCTACAGAGCCACAGCGGACTCTACCACGGGACCTGA

Function

NR:

description
PREDICTED: zinc finger protein Gfi-1b-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24191 False 1015 TUCP 0.57 6 2160845 2165614
XM_043230556.1 True 1504 mRNA 0.53 7 2160346 2165693

Neighbor

gene id symbol gene type direction distance location
si:ch211-106h11.3 LOC107691099,LOC107708266,LOC107755605,LOC107563746,LOC107672933,LOC107574113 coding upstream 19525 2131218 ~ 2140821 (+)
rangap1a rangap1,rangap1a,LOC107745514,LOC107722837 coding upstream 149915 2002679 ~ 2010431 (+)
LOC122333258 LOC107575253,LOC107595184,LOC107748256,LOC107740842,LOC107718680 coding upstream 218553 1925747 ~ 1941793 (+)
LOC122330213 plbd1,LOC107563730,LOC107572281,LOC107672894 coding upstream 289736 1867624 ~ 1870610 (+)
LOC122332958 NA coding upstream 430349 1728370 ~ 1729997 (+)
LOC122341668 LOC107755616,LOC107672923 coding downstream 95917 2261610 ~ 2267508 (+)
LOC122341669 LOC107745245,LOC107575245,LOC107755608,LOC107672924 coding downstream 101895 2267588 ~ 2270464 (+)
LOC122333376 NA coding downstream 127610 2293303 ~ 2296045 (+)
LOC122341568 LOC107672927,LOC107755614,LOC107742419,LOC107712223 coding downstream 158007 2323700 ~ 2340093 (+)
LOC122341598 NA coding downstream 175838 2341531 ~ 2349689 (+)
G16218 ddx39ab,LOC107563749,LOC107755611,LOC107672936,LOC107708265,LOC107691101,LOC107563747 non-coding upstream 9861 2143869 ~ 2150485 (+)
G16241 NA non-coding upstream 16540 2142227 ~ 2143806 (+)
G16238 myh9b,myh9,LOC106957010,LOC107751969 non-coding upstream 81496 2075160 ~ 2078850 (+)
G16219 myh9,LOC107745511,LOC107672897,LOC107691111 non-coding upstream 90631 2063565 ~ 2069715 (+)
G16226 NA non-coding upstream 104346 2050185 ~ 2056000 (+)
G16246 NA non-coding downstream 26393 2192086 ~ 2243135 (+)
G16240 NA non-coding downstream 76593 2242286 ~ 2302128 (+)
G16239 NA non-coding downstream 77664 2243357 ~ 2244932 (+)
LOC122341670 NA non-coding downstream 88136 2253829 ~ 2254655 (+)
G16310 NA non-coding downstream 131174 2296867 ~ 2356071 (+)
G16223 txn2,LOC107745512 other upstream 46007 2112037 ~ 2114339 (+)
trnar-ccu_2 NA other upstream 294561 1865713 ~ 1865785 (+)
G16002 pick1,LOC107734822,LOC107734770 other upstream 295117 1619312 ~ 1865229 (+)
trnar-ccu_1 NA other upstream 509618 1650656 ~ 1650728 (+)
G16003 pick1,LOC107734822,LOC106607154 other upstream 510852 1559387 ~ 1649494 (+)
G16347 NA other downstream 402391 2568084 ~ 2568999 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 475453 2641146 ~ 2646756 (+)
G16530 LOC107601546 other downstream 1117297 3282990 ~ 3283656 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other downstream 1155127 3320820 ~ 3323054 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other downstream 1344383 3510076 ~ 3526914 (+)

Expression


Co-expression Network