G16327 (LOC107741352,LOC107677336,LOC107567222,LOC107568146,LOC107696350)


Basic Information

Item Value
gene id G16327
gene name LOC107741352,LOC107677336,LOC107567222,LOC107568146,LOC107696350
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2426408 ~ 2434512 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU24270
tttttttttttttttttttttttttttttGTTTAAAAGAGCAAACGAAgtccagttttatttattcatgaattgGAGATCAGGATAGAAACACGTTTGTTTATTGGCTGCGGTCGCGGAACGTCACGTGGCTCAGTGACGCGCCGCCATTTTCATCCAATCAAAACAAAACCCGCGAAAACGGCCAGCGATTAGTCCTACGCTCGTTCTATattcaaacacattttacagcatcctctcgtttttttccccctttacaGCTATTTTTAGACGTCAGTGTAAATGCTGGGTGATGTTTTCAAAACACGCAAAAAATGAACGCGACGCACGGATAAACTGTGTAACGGACGACCGAGACGACACCGATTACGAGATAGTAGACTGCCACAGCACAGCCAAAGAAACAATCGACGACAGCGCCGTTTAACTTTAAGGTGAGCCGGAAATGCTAATGTTACGAAGTGCTTTAACGTAGCTAGCGGCTGCACCGGAGAAAGCCGTTTTTATCGACGTAACGGAAACGGGAAAATTCGCTAGCCtcacactttacaataagctcCACGCTTCAAGGTGTGCGGACGCAATAAAGAGGGAATCTTTTAATTAGGAACAGGACCGATTGCTAAAACTAGCCTACACACGAACCAAACTAGCCCGCTAGCGCTCTGTAGTTAGCGGCTAAAATGACAACAGTGGGGAAAATAGCGGGAAAAGCACAGCCTCGACTTGACTTTCCCGAATCCTATACAAAATTACATCATAACATTTAATCTATCTTGTTGCTTACCCTCTCGTTGTATTTGTGTATAGCCTATACTTTATAATGTGGAActagcatatttttattacagcatttattaatcttcgTTAATGTCAGTTCGCGGTGCAGCAACGATAAAACTAATGCTTAAATTCacataaatttaaattagcGAAACAAGCGTCGCTCGTTTATGTTTATCGACGTGGTTAACTAACGCCAGCAATggaaaccttattgtaaagtgttattcGGACCTAAATTCAATTTTTGATGTTACCTTAAACCGGTTAAAACAAGCGGGATTTGATGATACCGAAGTAGCTTTAGTCTACGGGCTGCGTTACTGTAGAAACCGATTACAGTAAACCCGACTGGTAAGATAAAACGCTCCTCAGCGAGCATCTCTCTCAGAAGCCGCTCCCGCTGCCCTCCATGTCGCTGGCGAGGACGGAGCGCTTGCGCAGGACGGCGTTGCTCCTCCGGGCCTGCGGGGCCGGCGCCTGGGGCCCCGCGGGGGGACAGGGAGCTCTGTACTGCGGCAGGCCGCTCTTGGTGGTGTCCAGCTCTTCAGGGTCTCCTTCCTGAACCCTCAGAGCGGCGATCACCTCTCGATCGGAAGGGCTGAGGGTCAGGCAGCCGCAGCTGTGGCCTTCGACACCGTCTTCCTCCCCGGGGTCGTCTTCCACCGTCATGAACGCATCTCCCCAAAGACTCTCGCAGAGGTCTCGGCCGTGCTGGTACATCTGACCgacaaacacaaatgcatgtgAGAGCGCCGTTCTTCTCAAAGCCTAGATGAGGCCTGTCAGGAGAAGAAGACAGGAGTGCTACAGCGGCCTCTTGTGGCAACGCTGAGTATTAAGCCCGTAAAAGGAGATgatttaaa
>TU24271
tttttttttttttttttttttttttttttGTTTAAAAGAGCAAACGAAgtccagttttatttattcatgaattgGAGATCAGGATAGAAACACGTTTGTTTATTGGCTGCGGTCGCGGAACGTCACGTGGCTCAGTGACGCGCCGCCATTTTCATCCAATCAAAACAAAACCCGCGAAAACGGCCAGCGATTAGTCCTACGCTCGTTCTATattcaaacacattttacagcatcctctcgtttttttccccctttacaGCTATTTTTAGACGTCAGTGTAAATGCTGGGTGATGTTTTCAAAACACGCAAAAAATGAACGCGACGCACGGATAAACTGTGTAACGGACGACCGAGACGACACCGATTACGAGATAGTAGACTGCCACAGCACAGCCAAAGAAACAATCGACGACAGCGCCGTTTAACTTTAAGATGCTTACAGAGGGCTGAGGACGCCGCACTTGTCCCAGTGAGAGTTGTCCACGGCGGACACAGAGCCGGACAGATCCTGGACATCCTTCTCTGAACAACACGAGTCTGGACAGAGACACAAGCGTTCACAAACTGGGACAAAGCCCTTTTAAAAAGTGACACTGAATGGACTGATCACACACTCTCCGTGTAGAGCGAGCACTGCTTGAGGTGAGGCTCCGGGCTGGGCGTGGCTTTGTGCCTCCCGTCCCGCAGACACGCCCCCTCGTGACTCATCACAGCGGCGGCCAATAGGCTCGCGAGGTGGGCGAGGCCGAGCAGAACCTTAGACACGCCCATCTTCTCCTGCGTTTACCTTTCAGCTGCAAGAAAATAATCCGGGAGGAAAAACGCTTCCATCAACAGACGTTCTTTAACATTTAGGTTCTGCTTCGTGAAA

Function

NR:

description
PREDICTED: riboflavin-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24270 True 1648 lncRNA 0.47 2 2426408 2429562
TU24271 False 872 lncRNA 0.37 3 2426408 2434512

Neighbor

gene id symbol gene type direction distance location
junbb junbb,LOC107741351,LOC107567221,LOC107568144,LOC107696348,LOC107726104 coding upstream 2858 2422071 ~ 2423550 (+)
LOC122341566 LOC107741349,LOC107677340,LOC107696333,LOC107575050,LOC107567211 coding upstream 55772 2357686 ~ 2370636 (+)
LOC122341598 NA coding upstream 76719 2341531 ~ 2349689 (+)
LOC122341568 LOC107672927,LOC107755614,LOC107742419,LOC107712223 coding upstream 86315 2323700 ~ 2340093 (+)
LOC122333376 NA coding upstream 130363 2293303 ~ 2296045 (+)
mast1b mast1b,LOC107741348,LOC107677342,LOC107571949,LOC107696309,LOC107567212 coding downstream 14963 2449475 ~ 2474998 (+)
LOC122341595 NA coding downstream 63471 2497983 ~ 2501016 (+)
atg4db LOC107677346,LOC107696340,LOC107751629,LOC107571953,LOC107741356 coding downstream 67076 2501588 ~ 2509106 (+)
evplb evplb,LOC107741346,LOC107677338,LOC107567223,LOC107696334,LOC107751618 coding downstream 78709 2513221 ~ 2542538 (+)
LOC122342193 NA coding downstream 130375 2564887 ~ 2564955 (+)
G16227 NA non-coding upstream 52330 2314300 ~ 2374078 (+)
G16310 NA non-coding upstream 70337 2296867 ~ 2356071 (+)
G16240 NA non-coding upstream 124280 2242286 ~ 2302128 (+)
LOC122341670 NA non-coding upstream 171753 2253829 ~ 2254655 (+)
G16239 NA non-coding upstream 181476 2243357 ~ 2244932 (+)
G16337 sphk1,LOC107741344,LOC107677335,LOC107751628,LOC107696311,LOC107571948 non-coding downstream 82000 2516512 ~ 2546903 (+)
G16344 NA non-coding downstream 129976 2564488 ~ 2565843 (+)
G16358 NA non-coding downstream 167326 2601838 ~ 2602537 (+)
G16357 NA non-coding downstream 197283 2631795 ~ 2634380 (+)
G16484 LOC107755608,LOC107563769,LOC107755618,LOC107565149,LOC107695670,LOC107575431 non-coding downstream 226363 2660875 ~ 2667259 (+)
G16222 LOC107751969,LOC107745511,LOC107572814,LOC107672897 other upstream 106270 2024348 ~ 2320138 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other upstream 260715 2160346 ~ 2165693 (+)
G16223 txn2,LOC107745512 other upstream 312069 2112037 ~ 2114339 (+)
trnar-ccu_2 NA other upstream 560623 1865713 ~ 1865785 (+)
G16002 pick1,LOC107734822,LOC107734770 other upstream 561179 1619312 ~ 1865229 (+)
G16347 NA other downstream 133572 2568084 ~ 2568999 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 206634 2641146 ~ 2646756 (+)
G16530 LOC107601546 other downstream 848478 3282990 ~ 3283656 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other downstream 886308 3320820 ~ 3323054 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other downstream 1075564 3510076 ~ 3526914 (+)

Expression


Co-expression Network