sumo2b (sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874)


Basic Information

Item Value
gene id sumo2b
gene name sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2641146 ~ 2646756 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU24318
CGCGGACGTGCGCGTCCCCGCGGAGTCTTTGTGTGGCGGCGTAGAGAAGCGCAAATACAATAACCATGGCCGACGAGAAACCCAAGGAGGGGGTGAAGACGGAGAACAACGACCACATCAATCTGAAGGTGGCGGGACAGGACGGGTCGGTGGTCCAGTTTAAAATCAAGAGACACACACCCCTCAGCAAGCTTATGAAGGCCTACTGTGAGAGACAGGGACTGACGATGAGGCAGATTCGGTTCCGGTTTGACGGACAGCCCATTAACGAAACAGACACGCCCGCACAGTTGGAAATGGAGGATGAAGACACAATCGACGTTTTCCAGCAACAGACAGGAGGACACATCTGAATCAGACGACTCTAGCGACCCCCGGCccgtctctctctatctctctctctctatctatctctctctctctatctctctatgtctctctatcgctctctatctctctctctctctctctatctctctatgtctctctatcgctctctatctatctctctctctctctctctatgtctctctatcgctctctctctgttcctggTTCTCCTCATGGTCATCTGTAACTGCTGTTGTATAGTGTTTTCAGttcatcatgtttttctttcgttttgtACATAAGGGTTTCCGCTACAGTAATTATTACATTGGGATTGTTGATTGCCGTAAAATCTGCCGTGTCAAGCCCGAGTCTAGACCATCATCTCTGTACAGACCAACTAATACACGTTTCCCCTTAACAATCATTGAGGAGGAGAGCCGCGTGCGCGGGTTCAGGGTTTCGTTCCGGTCCCGGACACGAGCACGCGGGCCTTTTCTTTCGAAATCTCGTTTCAGGAAGTGCTCTGCTGCGCTTTAAGCAGACGAACCTGCAGCCGGTTCAGATTGAGTTTCTGTTTTCCATTCAGACCAATTGGttttacaactttttatttttttttgtagtggtCATGTACAGTGCGTAACTTGTGTTAAACATGTTTTGACTCGAGTACGAACGAGGGAGTTCATGTTTCAGACAAGTCAAGCATCTGTCTGTATTGTCTAATctcttgttaaaataaaatattctc
>TU24319
CGCGGACGTGCGCGTCCCCGCGGAGTCTTTGTGTGGCGGCGTAGAGAAGCGCAAATACAATAACCATGGCCGACGAGAAACCCAAGGAGGGGGTGAAGACGGAGAACAACGACCACATCAATCTGAAGGTGGCGGGACAGGACGGGTCGGTGGTCCAGTTTAAAATCAAGAGACACACACCCCTCAGCAAGCTTATGAAGGCCTACTGTGAGAGACAGGGACTGACGATGAGGCAGATTCGGTTCCGGTTTGACGGACAGCCCATTAACGAAACAGACACGCCCGCACAGTTGGAAATGGAGGATGAAGACACAATCGACGTTTTCCAGCAACAGACAGGAGGACACATCTGAATCAGACGACTCTAGCGACCCCCGGCccgtctctctctatctctctctctctatctatctctctctctctatctctctatgtctctctatcgctctctatctctctctctctctctctatctctctatgtctctctatcgctctctatctatctctctctctctctctctctctctctatctctctatgtctctctatcgctctctctctgttcctggTTCTCCTCATGGTCATCTGTAACTGCTGTTGTATAGTGTTTTCAGttcatcatgtttttctttcgttttgtACATAAGGGTTTCCGCTACAGTAATTATTACATTGGGATTGTTGATTGCCGTAAAATCTGCCGTGTCAAGCCCGAGTCTAGACCATCATCTCTGTACAGACCAACTAATACACGTTTCCCCTTAACAATCATTGAGGAGGAGAGCCGCGTGCGCGGGTTCAGGGTTTCGTTCCGGTCCCGGACACGAGCACGCGGGCCTTTTCTTTCGAAATCTCGTTTCAGGAAGTGCTCTGCTGCGCTTTAAGCAGACGAACCTGCAGCCGGTTCAGATTGAGTTTCTGTTTTCCATTCAGACCAATTGGttttacaactttttatttttttttgtagtggtCATGTACAGTGCGTAACTTGTGTTAAACATGTTTTGACTCGAGTACGAACGAGGGAGTTCATGTTTCAGACAAGTCAAGCATCTGTCTGTATTGTCTAATctcttgttaaaataaaatattctc
>XM_043235063.1
GGCGGAGCGCGGTCAACGGACGCGCCGCTCGGGGTCGCGCACGCCGCGCCTGTTTTTAATCGGGGGCGCGGACGTGCGCGTCCCCGCGGAGTCTTTGTGTGGCGGCGTAGAGAAGCGCAAATACAATAACCATGGCCGACGAGAAACCCAAGGAGGGGGTGAAGACGGAGAACAACGACCACATCAATCTGAAGGTGGCGGGACAGGACGGGTCGGTGGTCCAGTTTAAAATCAAGAGACACACACCCCTCAGCAAGCTTATGAAGGCCTACTGTGAGAGACAGGGACTGACGATGAGGCAGATTCGGTTCCGGTTTGACGGACAGCCCATTAACGAAACAGACACGCCCGCACAGTTGGAAATGGAGGATGAAGACACAATCGACGTTTTCCAGCAACAGACAGGAGGACACATCTGAATCAGACGACTCTAGCGACCCCCGGCccgtctctctctatctctctctctctatctatctctctctctctatctctctatgtctctctatcgctctctatctctctctctctctctctatctctctatgtctctctatcgctctctatctatctctctctctctctctctctatctctctatgtctctctatcgctctctatctctctctctctctctctctctctctatctctctatgtctctctatcgctctctctctgttcctggTTCTCCTCATGGTCATCTGTAACTGCTGTTGTATAGTGTTTTCAGttcatcatgtttttctttcgttttgtACATAAGGGTTTCCGCTACAGTAATTATTACATTGGGATTGTTGATTGCCGTAAAATCTGCCGTGTCAAGCCCGAGTCTAGACCATCATCTCTGTACAGACCAACTAATACACGTTTCCCCTTAACAATCATTGAGGAGGAGAGCCGCGTGCGCGGGTTCAGGGTTTCGTTCCGGTCCCGGACACGAGCACGCGGGCCTTTTCTTTCGAAATCTCGTTTCAGGAAGTGCTCTGCTGCGCTTTAAGCAGACGAACCTGCAGCCGGTTCAGATTGAGTTTCTGTTTTCCATTCAGACCAATTGGttttacaactttttatttttttttgtagtggtCATGTACAGTGCGTAACTTGTGTTAAACATGTTTTGACTCGAGTACGAACGAGGGAGTTCATGTTTCAGACAAGTCAAGCATCTGTCTGTATTGTCTAATctcttgttaaaataaaatattctcttttta

Function

symbol description
sumo2b Predicted to enable protein tag and ubiquitin-like protein ligase binding activity. Acts upstream of or within chordate embryonic development and definitive hemopoiesis. Predicted to be active in nucleus. Is expressed in brain; cranial neural crest cell; digestive system; eye; and pectoral fin bud. Orthologous to human SUMO2 (small ubiquitin like modifier 2).
sumo2 Enables ubiquitin protein ligase binding activity. Involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process and protein sumoylation. Located in PML body.

NR:

description
PREDICTED: small ubiquitin-related modifier 2

GO:

id name namespace
GO:0016925 protein sumoylation biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12160 SUMO, SMT3; small ubiquitin-related modifier

RNA

RNA id representative length rna type GC content exon number start site end site
TU24318 False 1084 TUCP 0.47 5 2641212 2646750
TU24319 False 1100 TUCP 0.37 5 2641212 2646750
XM_043235063.1 True 1222 mRNA 0.48 4 2641146 2646756

Neighbor

gene id symbol gene type direction distance location
gga3b gga3,LOC107751623,LOC107677341,LOC107751620,LOC107696338,LOC107573175 coding upstream 14026 2617272 ~ 2627120 (+)
LOC122341564 LOC107569685,LOC107751621,LOC107696336,LOC107573174 coding upstream 25173 2609239 ~ 2615973 (+)
LOC122333418 NA coding upstream 56168 2579542 ~ 2584978 (+)
LOC122342193 NA coding upstream 76191 2564887 ~ 2564955 (+)
evplb evplb,LOC107741346,LOC107677338,LOC107567223,LOC107696334,LOC107751618 coding upstream 98608 2513221 ~ 2542538 (+)
jpt1b hn1,LOC107696352,LOC107751437,LOC107677345,LOC107751632,LOC107565162,LOC107728178 coding downstream 733 2647489 ~ 2658946 (+)
LOC122341575 LOC107678271,LOC107553656 coding downstream 622837 3269593 ~ 3272366 (+)
LOC122333469 LOC107576979,LOC107673194,LOC107716248 coding downstream 630413 3277169 ~ 3280555 (+)
LOC122333486 LOC107695665,LOC107601563 coding downstream 754670 3401426 ~ 3407130 (+)
cbx2 cbx2,LOC107695690,LOC107710978,LOC107696361,LOC107718939,LOC107571836,LOC107601561 coding downstream 763021 3409777 ~ 3415087 (+)
G16357 NA non-coding upstream 6766 2631795 ~ 2634380 (+)
G16358 NA non-coding upstream 38609 2601838 ~ 2602537 (+)
G16344 NA non-coding upstream 75303 2564488 ~ 2565843 (+)
G16337 sphk1,LOC107741344,LOC107677335,LOC107751628,LOC107696311,LOC107571948 non-coding upstream 94243 2516512 ~ 2546903 (+)
G16327 LOC107741352,LOC107677336,LOC107567222,LOC107568146,LOC107696350 non-coding upstream 206634 2426408 ~ 2434512 (+)
G16484 LOC107755608,LOC107563769,LOC107755618,LOC107565149,LOC107695670,LOC107575431 non-coding downstream 14119 2660875 ~ 2667259 (+)
G16492 LOC107696342,LOC107565150,LOC107563773,LOC107565157,LOC107579404,LOC107565149,LOC107755607,LOC107755606 non-coding downstream 52524 2699280 ~ 2702201 (+)
G16529 NA non-coding downstream 629643 3276399 ~ 3276980 (+)
G16549 NA non-coding downstream 732525 3379281 ~ 3379545 (+)
G16556 NA non-coding downstream 737792 3384548 ~ 3476586 (+)
G16347 NA other upstream 72147 2568084 ~ 2568999 (+)
G16222 LOC107751969,LOC107745511,LOC107572814,LOC107672897 other upstream 321008 2024348 ~ 2320138 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other upstream 475453 2160346 ~ 2165693 (+)
G16223 txn2,LOC107745512 other upstream 526807 2112037 ~ 2114339 (+)
trnar-ccu_2 NA other upstream 775361 1865713 ~ 1865785 (+)
G16530 LOC107601546 other downstream 636234 3282990 ~ 3283656 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other downstream 674064 3320820 ~ 3323054 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other downstream 863320 3510076 ~ 3526914 (+)
LOC122332297 NA other downstream 1162414 3809170 ~ 3813344 (+)
G16667 NA other downstream 1300867 3947623 ~ 3985611 (+)

Expression


Co-expression Network