G16492 (LOC107696342,LOC107565150,LOC107563773,LOC107565157,LOC107579404,LOC107565149,LOC107755607,LOC107755606)


Basic Information

Item Value
gene id G16492
gene name LOC107696342,LOC107565150,LOC107563773,LOC107565157,LOC107579404,LOC107565149,LOC107755607,LOC107755606
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2699280 ~ 2702201 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU24552
AAAGGTAAAACTTCCCCGATGGGTCTGAATGTGTGACTGATGTGTTTCTGTGAATCTCTACACACTAAACACACCGGCTGTTTGTCCTCCAGACAGAAGAGCTTGAGTTTCTCTCTGTGTACACCACAGATCTCCTCAGATCCAGACGAACGCCTCTcgtttctctctttcaggagCGACTCGCACAAGTTTTTTAGGACACGGTTACACGGAGGATCGTCTCTTGAGGACCTTCTCCTGCAGACGGGACACTCCTGAGTTCCCTTGGTTCTCCAGAACCGCTGAAGACACTCTTTACACACGCTGTGACTACACGATAAAACCACAGGATCCGTGAAGATTTCAATACACACGGGACAAGAAAAATCATCTGCAGACAGAGCATCCATTTTCACTATTTAATCTCCAGTAATCTatattttactttcactttctgAATGATGTTGCGAAAATAAACAACCACAGGAATCACAAAGATCTGCTGTCTGTCACAAACAAACGTTCTCGTCTTTCTCCACTGATCACCGATTCTTCATGCTTTTGTTGACAGTCAGTGTAACATAAAGGACAACCTTTCAGTCACTTCCTGAAACTGATCCTGATCCTGACAAAACCAAACTGAAATGTGGAGATCTGCTGTAGCACTGTAACTtgtgtttgtgtaagagCAGAGACCTTCTGGAGACTCACTGTTCTGGACGATGTCCTGCATCTTCTTCCAGACTCTGAAGGACAGGTTGCCCAAGTATCGTGGAACATGAATCAAAGCTCCAGAAGGTATCTGTGGATCCGGCTGTGATGAGATCTGGACTCTGGAAGAAGATTCAGGATCAGGACTGAAGTGGATTTGATTCAGAAGCAGAGAGACCAGAAACACCAGCAGATCACTCACCTTTCCATCGAGACCGGAAActtctgcagaacaaacacaccATTTATCATCaacaactcaa

Function

NR:

description
PREDICTED: tripartite motif-containing protein 35-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24552 True 953 lncRNA 0.36 3 2699280 2702201

Neighbor

gene id symbol gene type direction distance location
LOC122341572 LOC107751626,LOC107565147,LOC107696345 coding upstream 7768 2349775 ~ 2691512 (+)
jpt1b hn1,LOC107696352,LOC107751437,LOC107677345,LOC107751632,LOC107565162,LOC107728178 coding upstream 40334 2647489 ~ 2658946 (+)
gga3b gga3,LOC107751623,LOC107677341,LOC107751620,LOC107696338,LOC107573175 coding upstream 72160 2617272 ~ 2627120 (+)
LOC122341564 LOC107569685,LOC107751621,LOC107696336,LOC107573174 coding upstream 83307 2609239 ~ 2615973 (+)
LOC122333418 NA coding upstream 114302 2579542 ~ 2584978 (+)
LOC122341575 LOC107678271,LOC107553656 coding downstream 567392 3269593 ~ 3272366 (+)
LOC122333469 LOC107576979,LOC107673194,LOC107716248 coding downstream 574968 3277169 ~ 3280555 (+)
LOC122333486 LOC107695665,LOC107601563 coding downstream 699225 3401426 ~ 3407130 (+)
cbx2 cbx2,LOC107695690,LOC107710978,LOC107696361,LOC107718939,LOC107571836,LOC107601561 coding downstream 707576 3409777 ~ 3415087 (+)
tmem100a tmem100a,LOC107601598,LOC107710980,LOC107696362,LOC107695692,LOC107718941,LOC107567563 coding downstream 783951 3486152 ~ 3490051 (+)
G16484 LOC107755608,LOC107563769,LOC107755618,LOC107565149,LOC107695670,LOC107575431 non-coding upstream 32021 2660875 ~ 2667259 (+)
G16357 NA non-coding upstream 64900 2631795 ~ 2634380 (+)
G16358 NA non-coding upstream 96743 2601838 ~ 2602537 (+)
G16344 NA non-coding upstream 133437 2564488 ~ 2565843 (+)
G16337 sphk1,LOC107741344,LOC107677335,LOC107751628,LOC107696311,LOC107571948 non-coding upstream 152377 2516512 ~ 2546903 (+)
G16529 NA non-coding downstream 574198 3276399 ~ 3276980 (+)
G16549 NA non-coding downstream 677080 3379281 ~ 3379545 (+)
G16556 NA non-coding downstream 682347 3384548 ~ 3476586 (+)
G16575 NA non-coding downstream 838215 3540416 ~ 3540798 (+)
G16576 NA non-coding downstream 838756 3540957 ~ 3541640 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 52524 2641146 ~ 2646756 (+)
G16347 NA other upstream 130281 2568084 ~ 2568999 (+)
G16222 LOC107751969,LOC107745511,LOC107572814,LOC107672897 other upstream 379142 2024348 ~ 2320138 (+)
G16530 LOC107601546 other downstream 580789 3282990 ~ 3283656 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other downstream 618619 3320820 ~ 3323054 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other downstream 807875 3510076 ~ 3526914 (+)
LOC122332297 NA other downstream 1106969 3809170 ~ 3813344 (+)
G16667 NA other downstream 1245422 3947623 ~ 3985611 (+)

Expression


Co-expression Network