G16639 (LOC107570712,LOC107573119,LOC107663479,LOC107553614,LOC107750165,LOC107673185,LOC107716258)


Basic Information

Item Value
gene id G16639
gene name LOC107570712,LOC107573119,LOC107663479,LOC107553614,LOC107750165,LOC107673185,LOC107716258
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3838870 ~ 3861285 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU24766
CAACGTCTTTTATCTGAATCACAGTCTCTCCAGAATCTTCTCGACTGTGAACTCTACATGTGTATCGTCCCTCATCTTCAGGTCTCAGGTTGTCCAGACGGAGGGAGAAGTTTCCGTGTTGAATCTGATCAGTGAAGAAATTAGCTCTATCCTGATAATCCGGCTCCTGGGACTCTGGTCGACTCTCACCGTCTTGATAGAGATGAACCAGAGTGTCTAAGTCTGCTCTTCTCCATTCCACCTCCAGCCCCCTCATTGATAAGAGTTCATCAACATAACAGGGCAGAACCACTGAAGATCCCAGAGGAGCAACCAGAGGACCAGAAGGACTGTGAACAAACA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107570712

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24766 True 342 lncRNA 0.48 2 3838870 3861285

Neighbor

gene id symbol gene type direction distance location
tmem220 tmem220,LOC107570714,LOC107579199 coding upstream 7551 3829649 ~ 3831319 (+)
tmem100a tmem100a,LOC107601598,LOC107710980,LOC107696362,LOC107695692,LOC107718941,LOC107567563 coding upstream 348819 3486152 ~ 3490051 (+)
cbx2 cbx2,LOC107695690,LOC107710978,LOC107696361,LOC107718939,LOC107571836,LOC107601561 coding upstream 423783 3409777 ~ 3415087 (+)
LOC122333486 LOC107695665,LOC107601563 coding upstream 431740 3401426 ~ 3407130 (+)
LOC122333469 LOC107576979,LOC107673194,LOC107716248 coding upstream 558315 3277169 ~ 3280555 (+)
mrps7 mrps7,LOC107695700,LOC107673207,LOC107724659,LOC107579769,LOC108262546 coding downstream 14041 3875326 ~ 3877867 (+)
sstr5 sstr5,LOC107601569,LOC107695669,LOC107673199,LOC107716263 coding downstream 33983 3895268 ~ 3901449 (+)
LOC122341043 LOC107716255,LOC107673187,LOC107695671,LOC107724671 coding downstream 50724 3912009 ~ 3916436 (+)
LOC122340641 LOC107724675,LOC107673198,LOC107601590,LOC107695672,LOC107716262,LOC107553642 coding downstream 67063 3928348 ~ 3938422 (+)
LOC122333504 LOC107695702,LOC107724673,LOC107601588,LOC107673211,LOC107553654,LOC107716264 coding downstream 86547 3947832 ~ 3950655 (+)
G16619 NA non-coding upstream 17443 3800652 ~ 3821427 (+)
G16623 NA non-coding upstream 34359 3745907 ~ 3804511 (+)
G16598 LOC106601484 non-coding upstream 240667 3594677 ~ 3598203 (+)
G16589 NA non-coding upstream 269724 3568792 ~ 3569146 (+)
G16576 NA non-coding upstream 297230 3540957 ~ 3541640 (+)
G16651 NA non-coding downstream 20615 3881900 ~ 3882705 (+)
G16664 NA non-coding downstream 83316 3944601 ~ 3945039 (+)
LOC122341104 NA non-coding downstream 126241 3987526 ~ 3991553 (+)
G16675 NA non-coding downstream 157248 4018533 ~ 4023201 (+)
G16685 NA non-coding downstream 157962 4019247 ~ 4019689 (+)
LOC122332297 NA other upstream 25526 3809170 ~ 3813344 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other upstream 311956 3510076 ~ 3526914 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other upstream 515816 3320820 ~ 3323054 (+)
G16530 LOC107601546 other upstream 555214 3282990 ~ 3283656 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 1192114 2641146 ~ 2646756 (+)
G16667 NA other downstream 86338 3947623 ~ 3985611 (+)
G16672 NA other downstream 108230 3969515 ~ 4033526 (+)
LOC122340527 adcy9,LOC107715643,LOC107661757,LOC107695715,LOC107576850,LOC107718568 other downstream 495747 4357032 ~ 4405384 (+)
G16955 crebbp,LOC108440697 other downstream 576003 4437288 ~ 4438201 (+)
G16979 NA other downstream 597413 4458698 ~ 4462274 (+)

Expression


Co-expression Network