G16978 (LOC107601574,LOC107654242,LOC107715645)


Basic Information

Item Value
gene id G16978
gene name LOC107601574,LOC107654242,LOC107715645
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4470732 ~ 4546567 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU25277
GGATCGTTCAGTTATAGGTGAAAGTGAAACTGAGACAGGAATAATCTCTTTTTAATCTTTACATACTGTCACATCAGCTTTTAATcatatcaattatttattaaattctagTAAACGCGTCGATGTTTAGTCGAAGCATCTGTGTCCTTTAAGATGAAGTTCATTTGTCTGTTTCTGCTGATTATTAGTGGAATCACAGATTCGAGATCAGAGCAGTATGAAGTAGTTGGTCCGGCTGATCCTGTTTTTGCTGTAGCTGGTGAAGATGTGATTCTGCCCTGTTCAGTCAAACCCAGCATCAGTGTTGAGGACATGAGAGTGGAGTGGTTTAGATTACATCTGAAAGACTCACGAGTGCATCTCTATGATGatcataaagacaaaaatagagATCAGAGTGAGTCCTACAGAGGGAGAACAGAACTGAATCATCAAGAACTACAGAGAGGAGATGCATCACTCAAACTCTCATCAGTCCGAGTCTCTGATGAAGGACTTTATAAGTGTTTTATTGAGTCCAAATCTTGGAGTGATGATGTTACTGTTAATGTCAGAGTTGAAGCTGTAGGACATCCTCCGGAGATCACTGTAGATGGGTTTGATCGTTCAGGAGGACTTCATCTACAGTGTGAATCTGAAGGCTGGTATCCTGAACCTGATCTTGAGTGGCTGAACAGAGAAGGAGTCAGTTTGAGTTCAGAAactacagagacacacagagaagcAGACAAATTCAGTGTGAAACACACCATCACTGTATATGAGAGAGACGACAAGATTCACTGCAGGATCAGACTGAAGCATCTCATGCTGGAGACACAGATTATCACCTCA
>TU25278
GagaaagtaaaactaaaacaggAATGATCTCCGTACAATCTCTCATATCATCTTATTTATTCACTCTCTTAAAGTTTCAAGCATTTGTGTCCTTCAGAGATGaagtttatttgtttgaccTTCTTGATTATTTATGGAATTACAGATTCAAGATCAGAGCAGTATGAAGTAGTGGGGTCTGTGGATCCTGTTTTTGCCATAGCTGGTGAAGATGTGATTCTGCCCTGTTCAGTCAAACCCAGCATCAGTGTTGAGGACATGAGAGTGGAGTGGTTTAGATCTGACCTGAAAGACTCACAACTAGTGCATCTCTATGAGGATCATGAAGACGGCAATGCAGAGCAGATTGAGTCCTACAGAGGGAGAACAGAACTGACTCATCAAGAACTAGAGAGAGGAAACGCATCACTCAGACTCTCATCAGTCCGAGTCTCTGATGAAGGACGTTACAAGTGCTTTATTCAGTCCAAATCCTGGTATGATGACGTTACTGTTGATGTCAGTGTTGAAGGAGGACTTCATCTACAGTGTGAATCTGAAGGCTGG
>TU25283
GGATCGTTCAGTTATAGGTGAAAGTGAAACTGAGACAGGAATAATCTCTTTTTAATCTTTACATACTGTCACATCAGCTTTTAATcatatcaattatttattaaattctagTAAACGCGTCGATGTTTAGTCGAAGCATCTGTGTCCTTTAAGATGAAGTTCATTTGTCTGTTTCTGCTGATTATTAGTGGAATCACAGATTCGAGATCAGAGCAGTATGAAGTAGTTGGTCCGGCTGATCCTGTTTTTGCTGTAGCTGGTGAAGATGTGATTCTGCCCTGTTCAGTCAAACCCAGCATCAGTGTTGAGGACATGAGAGTGGAGTGGTTTAGATTACATCTGAAAGACTCACGAGTGCATCTCTATGATGatcataaagacaaaaatagagATCAGAGTGAGTCCTACAGAGGGAGAACAGAACTGAATCATCAAGAACTACAGAGAGGAAACGCATCACTCAAACTCTCATCAGTCCGAGTC

Function

NR:

description
PREDICTED: butyrophilin subfamily 1 member A1-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25277 True 834 TUCP 0.38 5 4470732 4533298
TU25278 False 546 TUCP 0.42 4 4510737 4546567
TU25283 False 483 TUCP 0.25 4 4470732 4486464

Neighbor

gene id symbol gene type direction distance location
srl srl,LOC107661647,LOC107718567,LOC107553668,LOC107695714 coding upstream 118972 4329686 ~ 4351760 (+)
tfap4 tfap4,LOC105021644,LOC107553667,LOC107695712,LOC107601578,LOC107715644,LOC107718566,LOC107661646 coding upstream 142534 4317659 ~ 4328198 (+)
pam16 pam16,LOC106601835,LOC107695711 coding upstream 194059 4275198 ~ 4276673 (+)
coro7 coro7,LOC107601580,LOC107715621,LOC107553663,LOC107695655,LOC108276516,LOC108431934 coding upstream 195765 4155070 ~ 4274967 (+)
hmox2b LOC107601585,LOC107742125,LOC107695708,LOC107553648,LOC107718627,LOC107678258 coding upstream 325649 4135870 ~ 4145083 (+)
LOC122340567 trap1 coding downstream 112793 4659360 ~ 4668688 (+)
LOC122341974 rorcb,LOC107757806,LOC107698501,LOC108433101,LOC107713654 coding downstream 183861 4730428 ~ 4741427 (+)
sh3gl1a sh3gl1a,LOC107600226,LOC107713652,LOC107698500,LOC107662987,LOC107599254 coding downstream 198266 4744833 ~ 4761297 (+)
stap2a stap2a,LOC107757807,LOC107600228,LOC107713653,LOC107698505,LOC108280350,LOC107599279,LOC108433098 coding downstream 216849 4763416 ~ 4773869 (+)
sema4e LOC107698504,LOC107757804,LOC107662986,LOC107713625,LOC107599253 coding downstream 226968 4773535 ~ 4787749 (+)
G16958 NA non-coding upstream 28424 4442016 ~ 4442308 (+)
G16956 NA non-coding upstream 29684 4411677 ~ 4441048 (+)
G16898 NA non-coding upstream 153681 4316836 ~ 4317051 (+)
G16897 NA non-coding upstream 155265 4315131 ~ 4315467 (+)
G16890 LOC107601582,LOC107695709,LOC107715639,LOC107718560,LOC107661641,LOC107553664 non-coding upstream 251303 4215863 ~ 4219429 (+)
G16982 LOC107553672,LOC107724861,LOC107660259,LOC107718569,LOC107601574,LOC107715645,LOC107654242,LOC107718570 non-coding downstream 5818 4552385 ~ 4657048 (+)
G16984 LOC107757310 non-coding downstream 10254 4556821 ~ 4614430 (+)
G16990 NA non-coding downstream 55457 4602024 ~ 4650638 (+)
G16991 NA non-coding downstream 57487 4604054 ~ 4654254 (+)
LOC122341099 NA non-coding downstream 100524 4647091 ~ 4649171 (+)
G16979 NA other upstream 8458 4458698 ~ 4462274 (+)
G16955 crebbp,LOC108440697 other upstream 32531 4437288 ~ 4438201 (+)
LOC122340527 adcy9,LOC107715643,LOC107661757,LOC107695715,LOC107576850,LOC107718568 other upstream 65348 4357032 ~ 4405384 (+)
G16672 NA other upstream 437206 3969515 ~ 4033526 (+)
G16667 NA other upstream 485121 3947623 ~ 3985611 (+)
G16981 NA other downstream 359089 4905656 ~ 4906966 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other downstream 763926 5310493 ~ 5312371 (+)
nfil3-2 nfil3-2,LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 other downstream 869191 5415758 ~ 5480607 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other downstream 1010441 5557008 ~ 5565974 (+)
G17302 NA other downstream 1050532 5597099 ~ 5598232 (+)

Expression


Co-expression Network