LOC122333539


Basic Information

Item Value
gene id LOC122333539
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4898839 ~ 4903279 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU25289
GAGAACAGGAAAATAGAACGAGAACATGATGACCTACAGAAGGAGAAAGAGCAGAATGCAACAAGAATGTGGTCGTCTACAGAACGTGAGAAGCAGAATACAACAAGAATTTTCTTCAGAACATGATCAACTAGAGCAGGAGAAGAGCAGAATACAACAAGaaatgaaaacGGGAAAAGAGGACAAGTGATGCTACAGTCAGAAAAAGAAGATGGAAATAAACAGAAGGATTTTTACACGGTAAAGTGCGCTTCACGGTGAGAGGTGCAGGTGAAGAAGAGTCTGAATCCTAAAGATAAATACTGGACTGTGGGTCTGCATTGGGCTTGAGATTCTTTACCTTTCTTCTCCTAAATGTGTGGAGCCTCAGAGACTGTTTATGGATTATGTCCATGTCTCTTGACGGCAATCTTGTTTGGGTCTTGATTGGCTTaaaattttaagattaaatgttgtatctatttttttcacaaactgtaaatatatctgTCAAGATCACTGTTACTTGAGTGCCAAACATCACGACATCTTTCCACTCTAGAGGTAATCTAtcataaacaatgtttttgatgtttgattATGCTTATGCTTAAGTGGTTATGAACtgcattcttttattattttataatgttctcTGATATTCACTTATGTTATA
>XR_006248639.1
AAGAGCAGAATGCAACAAGAATGTGGTCGTCTACAGAACGTGAGAAGCAGAATACAACAAGAATTTTCTTCAGAACATGATCAACTAGAGCAGGAGAAGAGCAGAATACAACAAGaaatgaaaacGGGAAAAGAGGACAAGTGATGCTACAGTCAGAAAAAGAAGATGGAAATAAACAGAAGGATTTTTACACGGTAAAGTGCGCTTCAC
>XR_006248640.1
ttttatttcaaatctggcaacatatttaatgtgttcTGTTTATTCTGAATTTTCTGCAGAATGTGGTCGTCTACAGAACGTGAGAAGCAGAATACAACAAGAATTTTCTTCAGAACATGATCAACTAGAGCAGGAGAAGAGCAGAATACAACAAGaaatgaaaacGGGAAAAGAGGACAAGTGATGCTACAGTCAGAAAAAGAAGATGGAAATAAACAGAAGGATTTTTACACGGTAAAGTGCGCTTCACGGTGAG

Function

GO: NA

KEGG:

id description
ko04977 Vitamin digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU25289 True 655 lncRNA 0.36 6 4898839 4903279
XR_006248639.1 False 210 lncRNA 0.39 5 4899497 4902880
XR_006248640.1 False 256 lncRNA 0.37 4 4900424 4902886

Neighbor

gene id symbol gene type direction distance location
LOC122341832 NA coding upstream 4232 4892115 ~ 4894607 (+)
LOC122341768 coa1,LOC107600219,LOC108428892 coding upstream 68358 4827437 ~ 4830481 (+)
wdr48b wdr48b,LOC107757819,LOC107662983,LOC107600221,LOC107713656 coding upstream 78183 4812939 ~ 4820656 (+)
LOC122332276 urgcp,LOC107662982 coding upstream 86370 4800795 ~ 4812469 (+)
LOC122334471 NA coding upstream 99689 4795442 ~ 4799150 (+)
LOC122341982 zgc:112320,pde6g,LOC107718621,LOC107660259,LOC107661785,LOC107553649 coding downstream 5072 4908351 ~ 4936740 (+)
si:dkey-282h22.5 NA coding downstream 49222 4952501 ~ 4957859 (+)
antkmt fam173a,LOC107553674 coding downstream 54733 4958012 ~ 4961980 (+)
xpo6 xpo6,LOC107715628,LOC107718574 coding downstream 60282 4963561 ~ 4983738 (+)
nme4 nme4,LOC107715653,LOC107695718,LOC107718576,LOC107661657,LOC107553633 coding downstream 84161 4987440 ~ 4991394 (+)
G17018 LOC107715650,LOC107550229 non-coding upstream 31521 4865208 ~ 4867318 (+)
G17003 NA non-coding upstream 104805 4792546 ~ 4794034 (+)
G16991 NA non-coding upstream 244585 4604054 ~ 4654254 (+)
G16990 NA non-coding upstream 248201 4602024 ~ 4650638 (+)
LOC122341099 NA non-coding upstream 249668 4647091 ~ 4649171 (+)
LOC122341984 NA non-coding downstream 9415 4912694 ~ 4914493 (+)
G17026 NA non-coding downstream 88717 4991996 ~ 5035379 (+)
LOC122341773 NA non-coding downstream 303965 5207244 ~ 5211693 (+)
G17059 NA non-coding downstream 305377 5208656 ~ 5208867 (+)
G17061 NA non-coding downstream 316371 5219650 ~ 5220372 (+)
G16978 LOC107601574,LOC107654242,LOC107715645 other upstream 352272 4470732 ~ 4546567 (+)
G16979 NA other upstream 436565 4458698 ~ 4462274 (+)
G16955 crebbp,LOC108440697 other upstream 460638 4437288 ~ 4438201 (+)
LOC122340527 adcy9,LOC107715643,LOC107661757,LOC107695715,LOC107576850,LOC107718568 other upstream 493455 4357032 ~ 4405384 (+)
G16672 NA other upstream 865313 3969515 ~ 4033526 (+)
G16981 NA other downstream 2377 4905656 ~ 4906966 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other downstream 407214 5310493 ~ 5312371 (+)
nfil3-2 nfil3-2,LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 other downstream 512479 5415758 ~ 5480607 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other downstream 653729 5557008 ~ 5565974 (+)
G17302 NA other downstream 693820 5597099 ~ 5598232 (+)

Expression


Co-expression Network