G16984 (LOC107757310)


Basic Information

Item Value
gene id G16984
gene name LOC107757310
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4556821 ~ 4614430 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU25312
GGCGTATAGAGGAGAAACGATAAGGAAATCATCGAGGAGATGGATGAGATAAGGAATTTGATAGTTATTACAGAGGATCCAGCAAACTGCTTCAGATAGCATGTCGAAAATTTTGGGGCTACTTTTGCAGCCGAAGGTGAGGCGCACAGCAAAATAGAATTTTTCACGCCAGCGAATGCCGAATAGATGCCAAAAGTCTGGGTGAATAGGCATTACTTTAAATGCTGAGGTTATATCGACTTTTGCCATCCAAACGCCATGGCCAGCGTTTTTATCATTGCGATTGCCTGGTCGATATTGTGGTAATGAAGGAGAACTCTTCGATTTGGATAAGGCTGTTGACGCTAGGAAAGGAGGAGTTGTGAGGGGAGAAGAGGTCGACTATAAGGCGTTTTTGCCTGAGAATTTCCTAGTGGCTACGCCCGATTGGGCTAATGTGGAAGGTATTGAAGGGAGGGACTGAAAAAGGGCCGACCATGAAACCTGCGTccacttctttctttattaagaGGTCTACCATTTCTGGTTCTGTCAGGGCGGACTGGAGGTTAGGGCAGGGGAGGCTGCTGACTCGGGATGGAAACCATGTGATAAACCTGATAAGAGATAATTAGAAAAGTTAGGATCAGGATGGAGCGATAATTCAGAAGCCAGATGGGAAATATTAACAGGAGTCGATAAatattgcttattatttttatttgttgctttgAACACTGAGCAGATGAGGCGGGAGTGGGCACCGCCACAAAAATTACAGACATGCAAAAATCTGCAGTGTTGCCTTAGACATTTGCCATCGTTGAAGTTAAGGCAAAGGGTGGCCGCGGGAAGAGGAGAGGCGGCGGTAGGGGTTGAGGATTAGGGGATTGGGAAGGTGAGTTGGGAATCTAGGGACGGAGCTTGTGGACAGGTTCAGGACAGGGAGGGATGGAAGGATTGATGAAGGGGCAAGTGGTGGATGAATGTGAGATGGACCTGCAGACCGCACAGGTGATATTGCGGCAACCGGTGAAAACGCGGTTATGGAGTTCGTTGTCTATGGCCCCCAGTATGGGCATTGAATCCACTGGGAAACTCTGATTGCACATTTTTAGTAAGGGAAAATCCGCCACAGTCAACTTGGCGGTCTCCAGGTATCGGGAAATGggagaaaggagagaaaaatgGTCGATGTCTGCGCCTGCGAGATCTGGGCTCTGATGGAACTGGAGACAGGAGTGGGGTCAGCGAGACGGCATTTGGGGGCAAAGGGAGGGGGTTAGCA

Function

NR:

description
PREDICTED: claudin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25312 True 1267 lncRNA 0.48 2 4556821 4614430

Neighbor

gene id symbol gene type direction distance location
LOC122333567 LOC107660259 coding upstream 23481 4502052 ~ 4533340 (+)
LOC122340833 LOC107718621 coding upstream 77699 4470732 ~ 4479122 (+)
srl srl,LOC107661647,LOC107718567,LOC107553668,LOC107695714 coding upstream 205061 4329686 ~ 4351760 (+)
tfap4 tfap4,LOC105021644,LOC107553667,LOC107695712,LOC107601578,LOC107715644,LOC107718566,LOC107661646 coding upstream 228623 4317659 ~ 4328198 (+)
pam16 pam16,LOC106601835,LOC107695711 coding upstream 280148 4275198 ~ 4276673 (+)
LOC122340567 trap1 coding downstream 44930 4659360 ~ 4668688 (+)
LOC122341974 rorcb,LOC107757806,LOC107698501,LOC108433101,LOC107713654 coding downstream 115998 4730428 ~ 4741427 (+)
sh3gl1a sh3gl1a,LOC107600226,LOC107713652,LOC107698500,LOC107662987,LOC107599254 coding downstream 130403 4744833 ~ 4761297 (+)
stap2a stap2a,LOC107757807,LOC107600228,LOC107713653,LOC107698505,LOC108280350,LOC107599279,LOC108433098 coding downstream 148986 4763416 ~ 4773869 (+)
sema4e LOC107698504,LOC107757804,LOC107662986,LOC107713625,LOC107599253 coding downstream 159105 4773535 ~ 4787749 (+)
G16958 NA non-coding upstream 114513 4442016 ~ 4442308 (+)
G16956 NA non-coding upstream 115773 4411677 ~ 4441048 (+)
G16898 NA non-coding upstream 239770 4316836 ~ 4317051 (+)
G16897 NA non-coding upstream 241354 4315131 ~ 4315467 (+)
G16890 LOC107601582,LOC107695709,LOC107715639,LOC107718560,LOC107661641,LOC107553664 non-coding upstream 337392 4215863 ~ 4219429 (+)
LOC122341099 NA non-coding downstream 32661 4647091 ~ 4649171 (+)
G17003 NA non-coding downstream 178116 4792546 ~ 4794034 (+)
G17018 LOC107715650,LOC107550229 non-coding downstream 250778 4865208 ~ 4867318 (+)
LOC122333539 NA non-coding downstream 284409 4898839 ~ 4903279 (+)
LOC122341984 NA non-coding downstream 298264 4912694 ~ 4914493 (+)
G16978 LOC107601574,LOC107654242,LOC107715645 other upstream 10254 4470732 ~ 4546567 (+)
G16979 NA other upstream 94547 4458698 ~ 4462274 (+)
G16955 crebbp,LOC108440697 other upstream 118620 4437288 ~ 4438201 (+)
LOC122340527 adcy9,LOC107715643,LOC107661757,LOC107695715,LOC107576850,LOC107718568 other upstream 151437 4357032 ~ 4405384 (+)
G16672 NA other upstream 523295 3969515 ~ 4033526 (+)
G16981 NA other downstream 291226 4905656 ~ 4906966 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other downstream 696063 5310493 ~ 5312371 (+)
nfil3-2 nfil3-2,LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 other downstream 801328 5415758 ~ 5480607 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other downstream 942578 5557008 ~ 5565974 (+)
G17302 NA other downstream 982669 5597099 ~ 5598232 (+)

Expression


Co-expression Network