G17115


Basic Information

Item Value
gene id G17115
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 5450539 ~ 5517864 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU25526
TCATCTCATCTCAGCTCACGGATTGTGTTTATTGCGGTATGTGGTTTCATTTCGCGTTTTACATCGAGAGAATATCAAAAGAGACTGATGCAATGCTtttcagacacaaacacataaatccTTCAGTGAAATGCTGTGGGGGTcagaatacaataaaatgaatgcaaactactaaaaaactaacatttcatATTGCACATAGCGCTGTATCTAaaatttagttaacattaaccaATATAAACACATATCGTTTAACCAACATATCTACATTGTAATGCATGTGAGCGATAATACAATTTATCTTCGTAATTTTACTCTGCAAGAGCTCGTATAAGTTCGCGAAAGCGCAGACTAATTGTGGAGAGTCGAGTTGCTTGAATTTGATGCTGATGGAGGAGGGTatgaaacatgatttaaaaatatccacTGAATCTTCGGTAATGCTGCCAAACGATTCCGTTCGATAATTAATCGTgctattttttgaaaatggatTCGTTAAATGACCATCGCACATGAAAGCGGATGTGAAAGTGTGTCTCTGGAATGCCACTGCACCTGTTGAAGCAGCTcgtcttcacacacacacacaccatcatcaTGCTGTAATCAGGAACACTGTGAACCGATCGTGTGTTATGCAAAGGCAGTCTGTATAGACGCTGACCTATATAAAAGTCTCATCCCAGGCCTCTAGGTGCATGATTGTGTTTCTATTCAAAGCCGGCGCATTATCGTACAGCGTCTCAGTCAGAGAACGAGAGCTGAAGGTCACTGAGAAACTTCGTCCCATTATCACTGCACTGAATGCGAGGAATTCAAGAAGGTGCAGTCGTGGTTATCATGTCTCTTGTCACTTAAAACAATTTGAAGAGCCTGGGTGCATGAAACCGAACCCGTGATATTTGGCTTTCCACCGAAGAGCCCTACGGTTAACATCATTGATGCCATTTACTTCGTGCTCCTAGTGTTATCGTGCACGGTTCGTTAGTGCGCGTGATAATGTGACCAAACCCTGGTATTTCAGCCTTTCgcaatgcaattaaatgcatgCTTATACGACTActtcacctaaaaataacagtttgctAAAATGCCATCAAATACGttcattagtttgtttcttcgtcataatagatttaaagaaatgcagcatttcatcaccaatggatgctctgcagtgaatgggtgccgtcaggatgagagtctaaacagctgataaaaacatcacaatattcCACAAGCAATCGTCTGGCCAAAATAAATACgtaacatttatttgcattccCCTGTTGTCCTCCGACATTAAAATCCACAGGCATACTGTTTAGAAATGCTTTGGATCGAATGTttgcttgtaaacagtgcttgaactgtgcatatttctctcctgattcagacgagacTGCTTTTGCAGTAGAAAGTTATGCATAAaggaaaaattaagaaaaataactgatggactggagagtacttgtggattattgtgatgtttttatcagctgttctgactctcattctgacggcacccattcactgcagaggatcgaTTGCGGAGCAGGTGATTAAACGCTCAGTTTCTCCAATTGTTCTGATGACGAGACAAactcatttatttctttgacgACCTAAGGGTGAGCGAACGataatttttggttgaaatatTCCTTTGAAGCTCATTAACTAAGCATCCTGTTTCACCCAGAAATTCATCACATAGCTGAAGTAAAATAGCTTGCGAATGCCGTTGAAGCCGTCATCAACTCCCAAGGTCAAATGTGAgccagaaatattttttttctctaaaagaATTGTTTTAGACGTGTCTCAGTGACACGTCTTGACAGTTTTCGTTAACTGTCCTCCAGAATCCAGAAGCTGAATCTGCTGTTATTTTGTGGCTCGTCCAGACGACAGTGAAACGGAGCGTATGAGTTGTTTCCGCTGGCCTTTTGGGCATCGACGTAGAACGAAGTCGTAGTCGGCTGACGTAGACATGGCATAATATACATTGGCCTTTTCTGGA

Function

GO:

id name namespace
GO:0005838 proteasome regulatory particle cellular_component
GO:0008540 proteasome regulatory particle, base subcomplex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:1902494 catalytic complex cellular_component

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU25526 True 2026 lncRNA 0.66 2 5450539 5517864

Neighbor

gene id symbol gene type direction distance location
LOC122341561 LOC107711124,LOC107659564,LOC107550256,LOC107718588,LOC107656793,LOC107579440 coding upstream 37406 5409599 ~ 5413133 (+)
swsap1 LOC107550247 coding upstream 168218 5280179 ~ 5282321 (+)
gadd45gip1 LOC107553677,LOC107661658,LOC107735399,LOC107715629,LOC107550245 coding upstream 209213 5239573 ~ 5241326 (+)
nme4 nme4,LOC107715653,LOC107695718,LOC107718576,LOC107661657,LOC107553633 coding upstream 459145 4987440 ~ 4991394 (+)
xpo6 xpo6,LOC107715628,LOC107718574 coding upstream 466801 4963561 ~ 4983738 (+)
LOC122331179 LOC107550260,LOC107659569 coding downstream 33332 5551196 ~ 5556139 (+)
LOC122331145 NA coding downstream 48701 5566565 ~ 5574214 (+)
gcdhb gcdhb,gcdh,LOC107718595,LOC107653471,LOC107731476,LOC107563244,LOC102794743 coding downstream 56537 5574401 ~ 5580741 (+)
tufm tufm,LOC107718598,LOC107659578,LOC107731475,LOC101070424,LOC106931188 coding downstream 299179 5817043 ~ 5821892 (+)
amdhd2 amdhd2,LOC107661858,LOC107718599,LOC107653464,LOC107753757 coding downstream 407365 5925229 ~ 5933647 (+)
G17112 NA non-coding upstream 44376 5405770 ~ 5406163 (+)
G17056 NA non-coding upstream 192787 5254500 ~ 5257752 (+)
G17061 NA non-coding upstream 230167 5219650 ~ 5220372 (+)
LOC122341773 NA non-coding upstream 238846 5207244 ~ 5211693 (+)
G17059 NA non-coding upstream 241672 5208656 ~ 5208867 (+)
G17300 NA non-coding downstream 76122 5593986 ~ 5594547 (+)
G17315 NA non-coding downstream 129381 5647245 ~ 5648079 (+)
G17322 NA non-coding downstream 172671 5690535 ~ 5695636 (+)
G17312 LOC107550264,LOC107659563,LOC107653452,LOC107563254,LOC107718634 non-coding downstream 217225 5735089 ~ 5737125 (+)
G17337 NA non-coding downstream 234117 5751981 ~ 5752280 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other upstream 138168 5310493 ~ 5312371 (+)
G16981 NA other upstream 543573 4905656 ~ 4906966 (+)
G16978 LOC107601574,LOC107654242,LOC107715645 other upstream 903972 4470732 ~ 4546567 (+)
G16979 NA other upstream 988265 4458698 ~ 4462274 (+)
G16955 crebbp,LOC108440697 other upstream 1012338 4437288 ~ 4438201 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other downstream 39144 5557008 ~ 5565974 (+)
G17302 NA other downstream 79235 5597099 ~ 5598232 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other downstream 439539 5957403 ~ 5962888 (+)
fbxw9 fbxw9,LOC107661857 other downstream 580337 6098201 ~ 6103626 (+)
LOC122341437 LOC107718607,LOC107653460 other downstream 668944 6186808 ~ 6195038 (+)

Expression


Co-expression Network