G17405 (LOC107661884,LOC107753766,LOC107565624,LOC107718602)


Basic Information

Item Value
gene id G17405
gene name LOC107661884,LOC107753766,LOC107565624,LOC107718602
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 5945293 ~ 5947708 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU25984
atttggtcaaatttgactttttattttattttattttatttactgttttttttttagatactgTCTTATCAAAAGccttcaaattaataaatttagtttttttttactagcatCTGACAACCAGAAGGAGTCGCATTACATCTCATTTAACTCTATCTTTTAACTGTTGCTTCtgtctgtgttgttttaaatggcAGCTGCTATTTTCATGTTGAAATCTAggttaaaatatgataaatgataaaacaacaacaatagcaAATTATTTTCAAGATCAGGAtgtttaaaaactcaaaaaacaacaacaagagccACATCAAGAAATACttattaatactaatttaaGTGTTGGCAGTCCGCTGATCAAGACGAAGACTTAttagttttgtgtttaaattgaAGTGTTATTGAAGAGTAAAATATACTTTCACTAGCTAGCAAATTTTAATCTGACAGAATTTGAAATAGAGCATATGACGGgtgatttaatacaaaaaagtgcacatattcatatttttattcctatattgtaatgcatttctgaATTAAACCGTATTTCTCAAATActtactgtcatttttgtaaCCTTTAGTACGTTAATAGTATCTGTAGGATCAAAGATCAATATTATACTGATATTGAATGTTACAGCTATGATGCCATAAAAGGAATATATAACGACGGGAACGAACCGATGTGTCTTCTCTCTTTCGCTTTCTGCCGTTTCACTTGTTGGTTTGTTTGCAAACAACAGcagaagtgattttttttaatctgagaTGTATATCATCTGAAGGCTGAATAAATacgctttccattgatgtatgtttttttaggagataaaactatttgaaaaactggagtctgagggtgcaaaaaatattaataaataagtaacaattaagaaaattgcctttaaatttgtccaaatgaagttcttagcaaatgcatattactgatcAAAGACAAAGTTTTGATAagtttacaatttacaaatttttttatgtatatatatttttttatgaaaatcacaaaatgtagaacatgatctttactcaATTATTtctggcatgaaagaaaaatagatcattttgaGCCATACAATTACACACATCAacgttttttggtttttttttgtgctccagggtcacatatgtaaCATACaatgcacatatacacacacataattaaatgattattacatatttgtcatccaaaatatttgtaataatccTTAAAAAGTCAACTTTCTTcaggattattatttttttattaatgtcaagTATATTTAAAACTCCCTATATAACAACCGTGCTTCTCGTCCGAGCTGTTGCCTGGTTAAGCTTTCAGtaaatttgacatttcaaaGCTTACAAACGAGGAACATCTCAAGCACTTGATCAAGTTCTGTTTTCTAGGCAGGTGAAATAAACACCAAACGCACCGAGTAAACCGTATCCACGATGTAGACGATCAAATTGATGCAAGTCATGCAGGACACGACAACCAGGCTGTCCCAGAAACAGTGATTGCAGGTTGGTGGTCTCGGATTGCGCCGGAAGCTGTAGAAAGGCCAAATCACCACAGCCGTGAGGTACATTAAAACCGCCAGTATGTTGTACCCCGTCAGGCATTTGTCCAGCGGGAAGGGTATCCGAGACAGCAACCTGCCGAtggtgaggatgatgatgaggagtGCCACGATGAAGCAGATGGAGTAGACGGCCACGCACCACTGGAGCCCGGGGGACCTGCTGTAAATGTTCGAATTCAGAGAGATGAAGATGATGCAGGCCACAAACGCCTCCAGGACCTTCAGCAGGCCCGGCACGGTGGACAGGAACCCGCTGATCTCCCCGGGTCTGGCCCGGGTCAGTCCCACCTCGGCTGAATACAGGCTGAAGCCGACGCAGGACGTGACCGTGGCCGCGATCCTGACCGGCTGCGAGGAGTGTACGAAGAAAGTGGGGTAGATGACCGAAGCGGCCAGCAGCATCAGCGTGGACAGCATCGCGAAAGCCGTCGTAAAGTCGTCCCAAGAGATGGGCAGCTTGCCGTTGAGGCTGGTGAACTCCAGGGTAATGACGAGGAGGGTCATGAAACAGCAGAAGCACCAGGTGAACATGCACCAGGCCCAGAACGAAGAGCCATTGTGGCCTTCAGAAGCCACCAGGCTGAAGGTAATGAGCGTTAGTGCAAACTCAAAGAGCCGGATTATCCCCACCGGCACGGTGAGAGACTGAGTGTTCAAGGTTACCATGATTAGGCGCTCCTTAAACCTCGCTTAAATTGATGATTTGACGCCTTCAAAGTGTTGTCTTCTCATTGACGTCTCTTGGTCATATTCCAGAAAATGATTTGAGGTCGCTTTCTAAGCCCGGTCGTCGTCCGTATGG

Function

NR:

description
PREDICTED: myeloid-associated differentiation marker homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25984 True 2396 lncRNA 0.54 2 5945293 5947708

Neighbor

gene id symbol gene type direction distance location
slc25a19 slc25a19,LOC107661860,LOC107563233,LOC107565621,LOC107653449,LOC107718625 coding upstream 2707 5937432 ~ 5942586 (+)
amdhd2 amdhd2,LOC107661858,LOC107718599,LOC107653464,LOC107753757 coding upstream 11646 5925229 ~ 5933647 (+)
tufm tufm,LOC107718598,LOC107659578,LOC107731475,LOC101070424,LOC106931188 coding upstream 123401 5817043 ~ 5821892 (+)
gcdhb gcdhb,gcdh,LOC107718595,LOC107653471,LOC107731476,LOC107563244,LOC102794743 coding upstream 364552 5574401 ~ 5580741 (+)
LOC122331145 NA coding upstream 371079 5566565 ~ 5574214 (+)
LOC122341440 fbxw9,LOC107661857 coding downstream 1441 5949149 ~ 5954642 (+)
dhps dhps,LOC107661880,LOC107563249,LOC107653447,LOC106592861 coding downstream 158725 6106433 ~ 6110339 (+)
prkar1b prkar1b,LOC107661853,LOC107653458 coding downstream 264883 6212591 ~ 6265327 (+)
pdgfab LOC107718638,LOC107653445,LOC107753752,LOC107563229,LOC107661852 coding downstream 328190 6275898 ~ 6293394 (+)
ccdc137 NA coding downstream 352118 6299826 ~ 6303823 (+)
G17337 NA non-coding upstream 193013 5751981 ~ 5752280 (+)
G17312 LOC107550264,LOC107659563,LOC107653452,LOC107563254,LOC107718634 non-coding upstream 208168 5735089 ~ 5737125 (+)
G17322 NA non-coding upstream 249657 5690535 ~ 5695636 (+)
G17315 NA non-coding upstream 297214 5647245 ~ 5648079 (+)
G17300 NA non-coding upstream 350746 5593986 ~ 5594547 (+)
G17412 NA non-coding downstream 165498 6113206 ~ 6113606 (+)
G17414 NA non-coding downstream 167996 6115704 ~ 6116092 (+)
G17449 NA non-coding downstream 319689 6267397 ~ 6267696 (+)
G17521 NA non-coding downstream 368560 6316268 ~ 6316621 (+)
G17528 LOC107693569,LOC107673775,LOC107661871,LOC107722887,LOC107563216,LOC107711138,LOC107572241,LOC107661873 non-coding downstream 398828 6346536 ~ 6353825 (+)
G17302 NA other upstream 347061 5597099 ~ 5598232 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other upstream 379319 5557008 ~ 5565974 (+)
nfil3-2 nfil3-2,LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 other upstream 464686 5415758 ~ 5480607 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other upstream 632922 5310493 ~ 5312371 (+)
G16981 NA other upstream 1038327 4905656 ~ 4906966 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other downstream 9695 5957403 ~ 5962888 (+)
fbxw9 fbxw9,LOC107661857 other downstream 150493 6098201 ~ 6103626 (+)
LOC122341437 LOC107718607,LOC107653460 other downstream 239100 6186808 ~ 6195038 (+)
G17590 NA other downstream 557207 6504915 ~ 6556750 (+)
LOC122331592 LOC107744988 other downstream 1635646 7583354 ~ 7591526 (+)

Expression


Co-expression Network