XLOC_006831 (snapc1b)


Basic Information

Item Value
gene id XLOC_006831
gene name snapc1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 37586491 ~ 37600600 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013138
ACGCTAGAAGGCGGTAGACATTCATGCTTTTCTCATGAGCTTCTCTAGAAGCATGTGAGAAAACAACAACACAAGTCTCACTTTTAACCcgattttatgcatttttaaagtgaagtGACCAATGAAGTGTTGGTGGTGATTAAATAGCAGGATGGAGCATTTCAGGGAAGTGGTCAAAACAGACATTGAAACACTGCTTGGTCGTCTTCAGGCGGCCGAGTCAGTTCGGTACGAGCAGTTTCTGGAGATCTGGAAGGACATGGATTTCAGCACAGTGTTCTTTGGTAAACAAGAGCCAAGAGAGAAAAGGATTTTTGCTCGTCTGGTTCTGTCTGTGGCGTGTCAGTATTTCTTCCCTCCATTCACTTTCCAGATCAGAGTCGGGGCCCTTTATCTGCTGTATGGGCTCTACAACACACAGCTCGCCACACCCAGAGAGAAGATTCGCATCGCTCTGAAGGACTGGAAGGATGCTATGCAGTTTGAGAGGGATGCGATGAACTCACAACATTATGATGTTACATATATCTTCAGAAAGCTCCTGTCAGAAAAAGCTTTCCACTTTACGGCCATGCCAAACCTGCTCTGCTCTAGGGAAAAGAAGAAAGATGGGAAGAGGAAAGATGTCTGTGAAGAATTTGTCGATCCACCGTCACGTCCACAACAGCTTGTTAACACTGACCTGCTAGAGGAAATTACAAATATCCACACACATTATGAgggtttgaagaaagctgtattCACAGAACCAGATCCAAACATGGATCTGATCCAACAAAATCTGGTTCCCAAACTAAGCAGTTCCATCATTACCTTTTCAACCTGGCAGAAGCATCGCGCGcaattTGAAGAGCAGGATCCTGGAGAAGGACCTTCGAATCAAGAAAGCTCCAGCAGAGCCCAGCTGCTAGCATCAATCAAATCCAAATCATACGGACAAGTTGTGGAGGCTTCCAAGTCCCGACGTCACAGGCAAACAGAGTTGATCCCTGCAGCTGGAGCAGAGCTGGAGCACAATGTGTCATCAAAAAAGAAAAGCTCATCACTCAAAGCACGAACTCATTTACGCTTTAAAGCTCAGGGAAATGACAGTGAGGAGACGACGAGGATGTGGTGTTTGAGTTCAGTCAAAGAAAAGAAAGCATCAAGAAAACTGGTGAAAAGATTCAACTGGAAACCTGAAGGTAGCAGCGATCCCACTTAACGTTAAGCCCCGCCATCTGGACTGGATGTGATTGGCGGGCCGCCCAGTGTTAAAAGCTAGTGCAATTTGTTCCTCGAGCTCCCGTTTCATCTGATTTGTTTTAATCTAATTTTACTTTTCTGCTCTTGGGTTAAAAGGGCGATAAATAGACATTGCTTTTGTTTATTAAGCAACACGTGACATTTTTAAGACTGCTCTTTTAATATTTGTACAGATTTGTATTTTAAGATTTTGGAGTAGATTACAGTTTCATAAAAGACATTTTCAGAACAATTGAGCATTTgctgtttttattgttatattagaTGGTTTTAAATGTtatggagttaacttgttaacaaaggaTCAGTAGCGTGACTATGCCTCACTttttaaccaatcacctactctataaaacttatttaaggcagatCAGCTCTCTAGCATTGTTCTTCTCAATCTTTCAAACCCAACCTCACTCCCTCTATTTGCTTGCTTTTTATTAACAATCAGATAACCCTCTCTTCCCTCCTAGGTTGAATCGGGGGGGGGGTCCATTCACTCAACTTAAATATTACAGAGACAGTACTCCCACTCTtgagtctctgggcatcatcgTAGGATGCCCGATCAAGCGacctacctgttcactgtttatcctcGTACTTCCCTTCCCCTTCCTCTCACTATTCCTTTACCTTTCCTTTCATCCTTACAATAAAGTCAAGCTCAAAGTGTGGCGTAGTCCATGCTGGTGAAATTGATTTTATGATTCAGAAGTTTGCATTTCATCACTCAACTTTTTGTTGTATATGAGCCAACTAATAGATCTCTGGTGCACTGAA
>TCONS_00013139
AACAACAACACAAGTCTCACTTTTAACCcgattttatgcatttttaaagtgaagtGACCAATGAAGTGTTGGTGGTGATTAAATAGCAGGATGGAGCATTTCAGGGAAGTGGTCAAAACAGACATTGAAACACTGCTTGGTCGTCTTCAGGCGGCCGAGTCAGTTCGGTACGAGCAGTTTCTGGAGATCTGGAAGGACATGGATTTCAGCACAGTGTTCTTTGGTAAACAAGAGCCAAGAGAGAAAAGGATTTTTGCTCGTCTGGTTCTGTCTGTGGCGTGTCAGTATTTCTTCCCTCCATTCACTTTCCAGATCAGAGTCGGGGCCCTTTATCTGCTGTATGGGCTCTACAACACACAGCTCGCCACACCCAGAGAGAAGATTCGCATCGCTCTGAAGGACTGGAAGGATGCTATGCAGTTTGAGAGGGATGCGATGAACTCACAACATTATGATGTTACATATATCTTCAGAAAGCTCCTGTCAGAAAAAGCTTTCCACTTTACGGCCATGCCAAACCTGGTGTTTATTGTGCATATTTACAGCTCTGCTCTAGGGAAAAGAAGAAAGATGGGAAGAGGAAAGATGTCTGTGAA
>TCONS_00013140
attgtaggAAGGTCGCtgaggcaacgttgtgtgtttgttgatATATCCACTAATCTATATTAGAAAACGCAGTGCTTGTGGCTGATCAGCAACATTTCATGACCGATTGATTTGGTAAACAAGAGCCAAGAGAGAAAAGGATTTTTGCTCGTCTGGTTCTGTCTGTGGCGTGTCAGTATTTCTTCCCTCCATTCACTTTCCAGATCAGAGTCGGGGCCCTTTATCTGCTGTATGGGCTCTACAACACACAGCTCGCCACACCCAG

Function

symbol description
snapc1b Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be part of snRNA-activating protein complex. Orthologous to human SNAPC1 (small nuclear RNA activating complex polypeptide 1).

GO:

id name namespace
GO:0042795 snRNA transcription by RNA polymerase II biological_process
GO:0042796 snRNA transcription by RNA polymerase III biological_process
GO:0019185 snRNA-activating protein complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-716 Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be part of snRNA-activating protein complex. Orthologous to human SNAPC1 (small nuclear RNA activating complex polypeptide 1).

Ensembl:

ensembl_id ENSDARG00000003827

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013138 False 2028 mRNA 0.43 10 37586491 37600600
TCONS_00013139 False 596 processed_transcript 0.45 4 37594515 37600539
TCONS_00013140 True 265 processed_transcript 0.46 2 37598711 37599245

Neighbor

gene id symbol gene type direction distance location
XLOC_006830 syt16 coding downstream 41004 37543498 ~ 37545487 (-)
XLOC_006829 NA coding downstream 50706 37528161 ~ 37535785 (-)
XLOC_006828 sgpp1 coding downstream 66674 37491804 ~ 37519817 (-)
XLOC_006827 wdr89 coding downstream 111502 37469093 ~ 37474989 (-)
XLOC_006826 ppp2r5eb coding downstream 120949 37421333 ~ 37465542 (-)
XLOC_006832 ifi45 coding upstream 5296 37605896 ~ 37608441 (-)
XLOC_006833 si:dkey-188i13.6 coding upstream 8858 37609458 ~ 37615029 (-)
XLOC_006834 zgc:152791 coding upstream 16918 37617518 ~ 37620290 (-)
XLOC_006835 ifi46 coding upstream 22676 37623276 ~ 37631092 (-)
XLOC_006836 NA coding upstream 32026 37632626 ~ 37636598 (-)
XLOC_006471 BX537274.2 misc downstream 27321586 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 36760266 825904 ~ 826225 (-)
XLOC_006819 AL845493.1 non-coding downstream 407775 37178602 ~ 37178716 (-)
XLOC_006817 NA non-coding downstream 475955 37110212 ~ 37110536 (-)
XLOC_006815 NA non-coding downstream 574255 37009812 ~ 37012236 (-)
XLOC_006814 NA non-coding downstream 588731 36995633 ~ 36997760 (-)
XLOC_006842 NA non-coding upstream 589921 38190521 ~ 38195214 (-)
XLOC_006843 NA non-coding upstream 1012625 38613225 ~ 38619719 (-)
XLOC_006846 BX323574.1 non-coding upstream 1252537 38853137 ~ 38853252 (-)
XLOC_006848 BX324188.2 non-coding upstream 1641955 39242555 ~ 39242672 (-)

Expression


Co-expression Network