Gene
RNA
| Item | Value |
|---|---|
| gene id | G16284 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 6672182 ~ 6673511 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU18220 | True | 965 | lncRNA | 0.38 | 2 | 6672182 | 6673511 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_06583486_06641365 | PAX7, PAX7B, PAX7A | coding | upstream | 30817 | 6583486 ~ 6641365 (+) |
| CI01000001_06564886_06568295 | NA | coding | upstream | 103887 | 6564886 ~ 6568295 (+) |
| CI01000001_06541966_06547403 | NA | coding | upstream | 124437 | 6541966 ~ 6547745 (+) |
| CI01000001_06531852_06539325 | TTC34 | coding | upstream | 132689 | 6531852 ~ 6539493 (+) |
| CI01000001_06519105_06525958 | NA | coding | upstream | 146062 | 6518633 ~ 6526120 (+) |
| CI01000001_06700913_06706131 | NA | coding | downstream | 27300 | 6700811 ~ 6706423 (+) |
| CI01000001_06718133_06747744 | KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 | coding | downstream | 43648 | 6717159 ~ 6747744 (+) |
| CI01000001_06825263_06835397 | EMC1 | coding | downstream | 151752 | 6825263 ~ 6836463 (+) |
| CI01000001_06884020_06889266 | UBR4 | coding | downstream | 210509 | 6884020 ~ 6889992 (+) |
| CI01000001_06893068_06917387 | IFFO2A | coding | downstream | 219557 | 6893068 ~ 6917660 (+) |
| G16257 | NA | non-coding | upstream | 156784 | 6515121 ~ 6515398 (+) |
| G16247 | NA | non-coding | upstream | 238854 | 6433084 ~ 6433328 (+) |
| G16212 | NA | non-coding | upstream | 389630 | 6282339 ~ 6282552 (+) |
| G16193 | NA | non-coding | upstream | 445037 | 6226859 ~ 6227145 (+) |
| G16189 | NA | non-coding | upstream | 463402 | 6208552 ~ 6208780 (+) |
| G16317 | NA | non-coding | downstream | 126657 | 6800168 ~ 6800381 (+) |
| G16937 | NA | non-coding | downstream | 262631 | 6936142 ~ 6946151 (+) |
| G16977 | NA | non-coding | downstream | 418242 | 7091753 ~ 7123993 (+) |
| G15995 | NA | other | upstream | 957231 | 5711885 ~ 5714951 (+) |
| CI01000001_05279884_05287123 | NA | other | upstream | 1382226 | 5279837 ~ 5287698 (+) |
| G15794 | NA | other | upstream | 1607478 | 5061218 ~ 5064704 (+) |
| CI01000001_03618075_03620436 | NA | other | upstream | 3050731 | 3618075 ~ 3621451 (+) |
| CI01000001_01668334_01670035 | CAMK2N1B | other | upstream | 5001178 | 1667762 ~ 1671167 (+) |
| CI01000001_07531945_07539781 | NA | other | downstream | 859061 | 7531541 ~ 7540586 (+) |
| G17234 | NA | other | downstream | 1358613 | 8032124 ~ 8032483 (+) |
| G17353 | NA | other | downstream | 2542511 | 9216022 ~ 9228859 (+) |
| G17354 | NA | other | downstream | 2560952 | 9234463 ~ 9240677 (+) |
| CI01000001_09435836_09436037 | NA | other | downstream | 2744817 | 9435836 ~ 9436373 (+) |
