G17808 (LOC107587964,LOC107599321)


Basic Information

Item Value
gene id G17808
gene name LOC107587964,LOC107599321
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7310174 ~ 7314152 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU26584
GAGGGGAGGCTAGGGGTTTCGAGGGACACGTCGTGGCGGGTCAGCACGAGAGGGGTTTTAATGTAGAGGGGTGAGGCAGTGGCGTCAGGGGGAGCGGCATGCGGCGCGTCACACACGGGGCCGTGTTTGGAAAAGTGCAGGCAGCTAGGCTTGGGGTTGGAGTTGATATCgagtgaggaagaggaagaggaggaggaagaggacggTGGTGGTTGGGGCTGGGGAAGGGGTGGGCCAAAGCCCACCCAGCGCAGGGGCGGAGGAGGGGAGCCGGGAGGCTGGGATTCGGGCCCGGGGGCGACGGGCCGAGCGCAGGGAGGGGGCTTGGGGTAGAAGTGGTGAGGGCCGGGATGGGAGGACGAGGAAGGGTACGGAGGGGGTGGCCGCTCCTCCACGTGGGACGAATAGACATGTGAGGAATCCGGCCGATTGGGCGACACGTCGTCTGAGCTGCGTCTCCAGGAGGGGGGGTGGGGATTGGAGATGTGGCCAGCTCACCGGGCTGCTCAGTGATCAGGGTGTCTGCCGGAGAGCCGGGCGGCTGGGCGCTGGGAGGCGTGGATGAGGCTTTGCGGGCCAGTGTGGACGAACTTTTGCCCTTCACCCACGATGTGTCCATGACTCTGACACCCACGCTGCCCACATAAGACCCACAAACCATCAAACACAACCACTGAAGGAAACCACAACAACTAGGTGTACTTTACAGAAACTTTAACCCTTGGGTGATTGTCTTTAACTCATAATTACACATAATTCCATTCGACCGCTCTCTACATCTCAAGTGTGCTTCTTTTGTTTACGATGTAATATTAAATTTCTAAAAGACTGACAAAAGTTGCCAAGGTCATTTAAAAGAGAGGCTTATTAGGATTATGTTATTACAGAAATACTACATTTCCCTTAcagaaataaaggtttttgtcatttaatgatTTACATCAAAACACTTCATAGTAACTTGcgtaattacaattaatattaattactgtaattgttACAAGATATAATTAGAGAACAGTATAATGATTTTGATTCAAATTACAGTTTAGGATTGGtaagtttttattaaagaagAATCTTATGGTCACCGAGACCATgctatttgatcaaaattaaattacaaacagTAAATTAGTGAAACATTActagaatgtaaaataacaaaaatttctaatttattcctgtgattcaaagctgtatttttatcatcattactccaatctttagtatcacatgatctttcataAATCAATCTAATAACTGATTTGCAGATTTATTACTACTACCAATGTTGAAAAAAGtctgatttatatttatgtaatattatttttgtaataataaaatatataatggttttgtaatattacagtgtttttgtgaaataaaaatctttgtaattttttgaaaatgttttataattaaaactatgcattttattattaattaaatatttaagtgttcTTTAATAGTCACTTTTGATCTACTCAATGCGCTCTTGCTTAATGTATCAAATAAACAACCTTCACAAGAAACaagaaatatatttgaacataCATGCACGTTTTAGCaatacagaaatgaaatgattgttaattatgttattaaatcCACGGTATAACAGAAAAGGTGAACGGTACCTTTGAATTTTCCTAATGCTGCATTGAGTGTGGATAAAACAATGAGTTTAGA

Function

NR:

description
PREDICTED: rho GTPase-activating protein 44-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26584 True 1692 lncRNA 0.42 2 7310174 7314152

Neighbor

gene id symbol gene type direction distance location
LOC122341489 LOC107587965,LOC107672450,LOC107711223,LOC107744987,LOC107670478,LOC107599348 coding upstream 9441 7294957 ~ 7300733 (+)
slc16a5b LOC107672512,LOC107711222,LOC107587967,LOC107599319,LOC107744965 coding upstream 29138 7270950 ~ 7281036 (+)
metrnla metrnl,LOC107672492,LOC107711221,LOC107587969,LOC107744963,LOC107670526,LOC107599318 coding upstream 58251 7241697 ~ 7251923 (+)
tbcd tbcd coding upstream 112486 7166534 ~ 7197688 (+)
LOC122329403 fn3krp,LOC107670452,LOC104918611,LOC107599346,LOC107744985 coding upstream 145619 7160754 ~ 7164555 (+)
hs3st3b1a hs3st3b1a,LOC107711227,LOC107672504,LOC107587963,LOC107599323,LOC107744967 coding downstream 48764 7362916 ~ 7374464 (+)
ttyh2l ttyh2l,LOC107744973,LOC107670532,LOC107599325,LOC107711233,LOC107672455,LOC107587999 coding downstream 305498 7619650 ~ 7648946 (+)
chmp6a chmp6a,LOC107744992,LOC107599353,LOC107711234,LOC107672453,LOC108432238 coding downstream 335477 7649629 ~ 7655190 (+)
LOC122334406 LOC107587953 coding downstream 471964 7786116 ~ 7796653 (+)
ptger1c ptger1c,LOC107757344,LOC107567231,LOC107672434,LOC107670435,LOC107711161,LOC107587998 coding downstream 487144 7801296 ~ 7807762 (+)
G17806 NA non-coding upstream 27228 7265343 ~ 7282946 (+)
G17791 NA non-coding upstream 43452 7194782 ~ 7266722 (+)
G17704 NA non-coding upstream 333909 6922196 ~ 6976265 (+)
G17699 NA non-coding upstream 407013 6902746 ~ 6903161 (+)
G17683 NA non-coding upstream 462568 6846938 ~ 6847606 (+)
G17861 NA non-coding downstream 78439 7392591 ~ 7392872 (+)
G17862 NA non-coding downstream 84087 7398239 ~ 7398465 (+)
G17867 NA non-coding downstream 95086 7409238 ~ 7409540 (+)
G17912 NA non-coding downstream 357551 7671703 ~ 7728184 (+)
G17928 NA non-coding downstream 511034 7825186 ~ 7825842 (+)
G17590 NA other upstream 753424 6504915 ~ 6556750 (+)
LOC122341437 LOC107718607,LOC107653460 other upstream 1115136 6186808 ~ 6195038 (+)
fbxw9 fbxw9,LOC107661857 other upstream 1206548 6098201 ~ 6103626 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other upstream 1347286 5957403 ~ 5962888 (+)
G17302 NA other upstream 1711942 5597099 ~ 5598232 (+)
LOC122331592 LOC107744988 other downstream 269202 7583354 ~ 7591526 (+)
baiap2a baiap2a,LOC107672452,LOC107711237,LOC107670476 other downstream 341879 7656031 ~ 7725519 (+)
slc27a1a slc27a1a,slc27a1,LOC107670527,LOC107757377,LOC107567246,LOC107711240,LOC107672489,LOC107587997 other downstream 494091 7808243 ~ 7821078 (+)
LOC122341274 LOC107711242,LOC107672448,LOC107588011,LOC107757354,LOC107670494 other downstream 524804 7838956 ~ 7841669 (+)
LOC122331768 LOC107710248 other downstream 635609 7949761 ~ 7950417 (+)

Expression


Co-expression Network