LOC122331592 (LOC107744988)


Basic Information

Item Value
gene id LOC122331592
gene name LOC107744988
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7583354 ~ 7591526 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU26695
AGGCGTATGTCAGATCAGCCCTGTCAACATCACAAGAAAGACAACTTGGGTGCATTTGAAAGAACTGAAATTGACTTTTTACGGTgacttttaaaaggtaaaaagagGACAGGAGCTACAAAAGAGaagaagaaaaaaaaacagaagtgggactgaagaagagaggaagattaaagaaaaaaagaagaatctAAACGTCTAAAGGCGCTTGACAAAGGCCTGATCCAGGAGACCAGCCATGGAGGAAGATTACAAGAAACCACCACCGTCCTATGAAGAAGTTATTACCGAGCAGCACACGAACAACATTAGTCAGAGCCGTTCCGCTGACAACAGACAGGGCTGTTGCTGCAGATGTTGCATTAGCACCAAGAACTGTCTGATGAGTCCGGAGTGCGGCCGAGCTCTCAACATTGCCAGCGTGATTGCCATGTGTGGCATGTGTATTCGAATGTTTGTCTaacaCAGTCTCCTGTGGACCATCTACTCCAGATCTCATCCAGGGGTGGCcttcttaaattaaaaaggaaacaaagacatttgctctgttccaaaacctagtgatcTGCAACATTTATAAGCTTTCCCCCCAATACCAATCCCAACGCTGTTCCAAATAGGATGCAGCACTGCATTTATCATTCACAGATAAGGTAATCCCAGAATGAACTGacaaaaatttacatttcaaataggAAACGTCGAAGTTAAACTTATAAATCCGAAGTATATTTAATTCAGCACTGACAAATGTAATTGAAAAACACAGCCTGtgagcttagcaacatgctataATTATACTTAATAAGAATCAACTGTTTTAGTAGTCTCTCACATACGCCAAGGGCCTAATTCGTGAAATAGCGGCACAATAAATTCGTAAATGGTTTAGAAAATCATTCGTATGTTAAGTGTTTGATTTAATTAGATTGGCATAAGTAATTAGACAGGTAATTTCAATAGGGATTCAAGCTCTAAAGAATTTTTTGAGGACAAAATATTTCCCCAGGCAGATTTCAGTCGAAGTTGGTAACACGAATTCATTGCCTTGTCCAACAAAATGAATACTGAGAGAGCTGCGCTAGAATAATGACAAAAGACGCTGACAACGgacctttttttgtctgcaaAATTTTGCTAATGTGACTGCACCTCCACAGTATGTGATTTCATTTCGGAAGACAATAgcgaaaatatttacattaatattttctcTCTAACCCAAGTCACCTTTGTTTATCCGGAGCTTTATACATTATCCTTTGCTCAATACTGAACACGAAAGAAAAAGCATCAGTGATGCAAACTTCATCAAATATTAGGCAATCCAAAGCAGCTCTAACAAGACCCTCCAGAACCtaaaatacttgaaaaatgttaattaagctcataattttctatttttttattttataaatcggAGCCAGCCACGTAATTGGACGTGGCATCCACCTTAATTATGTATCCGGCAATCGCAACTTTGCATTTATCATTAACACTTCTTCGAAAACTTCTTGCGCGAGAATCTAATTTATGATGCTgagcaatgttttaaatgatgtgCACTAGACAGACGGGCTAATAAATCACAATGCTAGATTATTTTCCAAACTGTGGTGGATCGTTTTGCTTTAAGACTGTAAAATATTCAACCTGTATAGTGAGAGCGTGTAAATAAGGATCTTCTTCTCTGGAAATGAAGCCATCTGTTTTATAGCGGCACGTAAACAAAAAGCTTTACAGCCGGAGCGTTTTACCTTAAGGAGTAAATATTTATCCAGCTCAAAATAGATGAACTCTACACTcgaatatgtaaaataataaagatatctGACATTAGCGAATACAAATGAA
>TU26696
AGGCGTATGTCAGATCAGCCCTGTCAACATCACAAGAAAGACAACTTGGGTGCATTTGAAAGAACTGAAATTGACTTTTTACGGTgacttttaaaaggtaaaaagagGACAGGAGCTACAAAAGAGGTAAACAAGATCATCTGAGAAGCGTTTCTATGCTCTTTTCTCCTTTTGTGGCAGTGCAGTGATTGAGGATTTTAATTTCTTCTCAATttcaagaagaagaaaaaaaaacagaagtgggactgaagaagagaggaagattaaagaaaaaaagaagaatctAAACGTCTAAAGGCGCTTGACAAAGGCCTGATCCAGGAGACCAGCCATGGAGGAAGATTACAAGAAACCACCACCGTCCTATGAAGAAGTTATTACCGAGCAGCACACGAACAACATTAGTCAGAGCCGTTCCGCTGACAACAGACAGGGCTGTTGCTGCAGATGTTGCATTAGCACCAAGAACTGTCTGATGAGTCCGGAGTGCGGCCGAGCTCTCAACATTGCCAGCGTGATTGCCATGTGTGGCATGTGTATTCGAATGTTTGTCTaacaCAGTCTCCTGTGGACCATCTACTCCAGATCTCATCCAGGGGTGGCcttcttaaattaaaaaggaaacaaagacatttgctctgttccaaaacctagtgatcTGCAACATTTATAAGCTTTCCCCCCAATACCAATCCCAACGCTGTTCCAAATAGGATGCAGCACTGCATTTATCATTCACAGATAAGGTAATCCCAGAATGAACTGacaaaaatttacatttcaaataggAAACGTCGAAGTTAAACTTATAAATCCGAAGTATATTTAATTCAGCACTGACAAATGTAATTGAAAAACACAGCCTGtgagcttagcaacatgctataATTATACTTAATAAGAATCAACTGTTTTAGTAGTCTCTCACATACGCCAAGGGCCTAATTCGTGAAATAGCGGCACAATAAATTCGTAAATGGTTTAGAAAATCATTCGTATGTTAAGTGTTTGATTTAATTAGATTGGCATAAGTAATTAGACAGGTAATTTCAATAGGGATTCAAGCTCTAAAGAATTTTTTGAGGACAAAATATTTCCCCAGGCAGATTTCAGTCGAAGTTGGTAACACGAATTCATTGCCTTGTCCAACAAAATGAATACTGAGAGAGCTGCGCTAGAATAATGACAAAAGACGCTGACAACGgacctttttttgtctgcaaAATTTTGCTAATGTGACTGCACCTCCACAGTATGTGATTTCATTTCGGAAGACAATAgcgaaaatatttacattaatattttctcTCTAACCCAAGTCACCTTTGTTTATCCGGAGCTTTATACATTATCCTTTGCTCAATACTGAACACGAAAGAAAAAGCATCAGTGATGCAAACTTCATCAAATATTAGGCAATCCAAAGCAGCTCTAACAAGACCCTCCAGAACCtaaaatacttgaaaaatgttaattaagctcataattttctatttttttattttataaatcggAGCCAGCCACGTAATTGGACGTGGCATCCACCTTAATTATGTATCCGGCAATCGCAACTTTGCATTTATCATTAACACTTCTTCGAAAACTTCTTGCGCGAGAATCTAATTTATGATGCTgagcaatgttttaaatgatgtgCACTAGACAGACGGGCTAATAAATCACAATGCTAGATTATTTTCCAAACTGTGGTGGATCGTTTTGCTTTAAGACTGTAAAATATTCAACCTGTATAGTGAGAGCGTGTAAATAAGGATCTTCTTCTCTGGAAATGAAGCCATCTGTTTTATAGCGGCACGTAAACAAAAAGCTTTACAGCCGGAGCGTTTTACCTTAAGGAGTAAATATTTATCCAGCTCAAAATAGATGAACTCTACACTcgaatatgtaaaataataaagatatctGACATTAGCGAATACAAATGAA
>XM_043229148.1
CTGTCATCCCTTTCTTCAGTTCATGGAAAGTTAAAATGAGCAGACAAATTGGCGTTTTCACGCAGTCCCCTAATGACGCATTCATAAATGTACTTATTATGTGATATTTGGGATTCTCTTTGGTCGGAGGTCTGCTGTGATCAGAAGAGACTGCTTAACTCCAGCAGAAATGGGACAGAGCTGCAGTGGAATGTCTGGCCCTTGTCCTGGGTGCCAGGGAAGCTGTGGAGACAACTGTCACCGGGATGAGCCGTGTGTGGACCGCTGCTGTAACCTGTGCTGTCAGTTCTGTCTAGACGGCTGCTGTCTCATCTGCCCAGACGACTGCGGCTACACGTTGTGTTTTACGTGCACTATGATTGCCAACTCCTGTGCTGCCGTTCTGACCACTGAGCAGCCCAGATCTACACAGAAACCAAGAGAGGATTCTCATTTGGAAGAAGGTCAGGTGATTTAGATCATCTGATGAATGTACTGGAAACTAATGGGCTGGATGAAGACCTGATTCCTACTTCATGATGACTTCGAGAGACTGAAAAACATGAAGGCAGTTCATTGAAAGTGCATTTGTAGATCATTTGCTACCGCTGTAATTGAGCCCATGCTATATTATGCATACACTGTATTGTATACTACTGAATTATGAACTACAAAAGTGTCATCTGTTAAATGTATCTAGAGGATCTATTCAAAAGTGAAACCCCTTGTGCaatcatgcaaaataaataaggcTTTGCTTGACGTGGTATGCACCAGAATGACTGAGTCTCAGAGGACAGACAGGAAAAACTTGATTTGCACACCCTGTGGAACACGCCGTCACAGAggtactgtatttatatttagaggTCCACCCAGGCGTATGTCAGATCAGCCCTGTCAACATCACAAGAAAGACAACTTGGGTGCATTTGAAAGAACTGAAATTGACTTTTTACGGTgacttttaaaaggtaaaaagagGACAGGAGCTACAAAAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26695 False 1854 lncRNA 0.56 4 7585473 7591526
TU26696 True 1947 lncRNA 0.38 3 7585473 7591526
XM_043229148.1 False 982 mRNA 0.44 2 7583354 7585598

Neighbor

gene id symbol gene type direction distance location
hs3st3b1a hs3st3b1a,LOC107711227,LOC107672504,LOC107587963,LOC107599323,LOC107744967 coding upstream 208890 7362916 ~ 7374464 (+)
LOC122341489 LOC107587965,LOC107672450,LOC107711223,LOC107744987,LOC107670478,LOC107599348 coding upstream 282621 7294957 ~ 7300733 (+)
slc16a5b LOC107672512,LOC107711222,LOC107587967,LOC107599319,LOC107744965 coding upstream 302318 7270950 ~ 7281036 (+)
metrnla metrnl,LOC107672492,LOC107711221,LOC107587969,LOC107744963,LOC107670526,LOC107599318 coding upstream 331431 7241697 ~ 7251923 (+)
tbcd tbcd coding upstream 385666 7166534 ~ 7197688 (+)
ttyh2l ttyh2l,LOC107744973,LOC107670532,LOC107599325,LOC107711233,LOC107672455,LOC107587999 coding downstream 28124 7619650 ~ 7648946 (+)
chmp6a chmp6a,LOC107744992,LOC107599353,LOC107711234,LOC107672453,LOC108432238 coding downstream 58103 7649629 ~ 7655190 (+)
LOC122334406 LOC107587953 coding downstream 194590 7786116 ~ 7796653 (+)
ptger1c ptger1c,LOC107757344,LOC107567231,LOC107672434,LOC107670435,LOC107711161,LOC107587998 coding downstream 209770 7801296 ~ 7807762 (+)
LOC122331730 NA coding downstream 383017 7974543 ~ 7977890 (+)
G17867 NA non-coding upstream 173814 7409238 ~ 7409540 (+)
G17862 NA non-coding upstream 184889 7398239 ~ 7398465 (+)
G17861 NA non-coding upstream 190482 7392591 ~ 7392872 (+)
G17808 LOC107587964,LOC107599321 non-coding upstream 269202 7310174 ~ 7314152 (+)
G17806 NA non-coding upstream 300408 7265343 ~ 7282946 (+)
G17912 NA non-coding downstream 80177 7671703 ~ 7728184 (+)
G17928 NA non-coding downstream 233660 7825186 ~ 7825842 (+)
G17930 NA non-coding downstream 237958 7829484 ~ 7829860 (+)
G17934 NA non-coding downstream 250813 7842339 ~ 7842968 (+)
G17936 si:dkey-210j14.3,LOC107672496,LOC107757375,LOC107711245,LOC107711244,LOC107670496 non-coding downstream 252055 7843581 ~ 7844217 (+)
G17590 NA other upstream 1026604 6504915 ~ 6556750 (+)
LOC122341437 LOC107718607,LOC107653460 other upstream 1388316 6186808 ~ 6195038 (+)
fbxw9 fbxw9,LOC107661857 other upstream 1479728 6098201 ~ 6103626 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other upstream 1620466 5957403 ~ 5962888 (+)
G17302 NA other upstream 1985122 5597099 ~ 5598232 (+)
baiap2a baiap2a,LOC107672452,LOC107711237,LOC107670476 other downstream 64505 7656031 ~ 7725519 (+)
slc27a1a slc27a1a,slc27a1,LOC107670527,LOC107757377,LOC107567246,LOC107711240,LOC107672489,LOC107587997 other downstream 216717 7808243 ~ 7821078 (+)
LOC122341274 LOC107711242,LOC107672448,LOC107588011,LOC107757354,LOC107670494 other downstream 247430 7838956 ~ 7841669 (+)
LOC122331768 LOC107710248 other downstream 358235 7949761 ~ 7950417 (+)
G17985 ighv4-5 other downstream 359328 7950854 ~ 7951364 (+)

Expression


Co-expression Network