LOC122331768 (LOC107710248)


Basic Information

Item Value
gene id LOC122331768
gene name LOC107710248
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7949761 ~ 7950417 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU26829
GAGAGAGTGAAGAATCACTTCAGTTCTTTCAAACTGTGAAACAAACCATGATCTCTTCATCTTTAGTGTTGTTTCTGGCAGTCATATCCTGTATTGATTCAGAAGAACTCACTCAGCCTGAGTCTCTGACTGTTCATCCTGATGCCGCTCTCACTATCAACTGTAAAGTCTCCTATTCAGTTACAAGCTATGGTACAGCCTGGATTCGTCAACCTGCAGGAAAAGCTCTGGAGTGGATTGGAGTTATCTGGAGCGGTGGAAGCACAGACTACAAGGATTCCCTGAAAAGCAAGTTCAGTATCAGCAGAGACACTTCCAGTAACACAATAACACTGAAAGGACAGAATATGAGAGCTGAAGACACAGCTGTGTATTATTGTGCCAGAC
>unassigned_transcript_276
AAACAGCAGTCATGAGTCAGTTTATACATTCATCTGATCACTAGAGAGAGTGAAGAATCACTTCAGTTCTTTCAAACTGTGAAACAAACCATGATCTCTTCATCTTTAGTGTTGTTTCTGGCAGTCATATCCTGTATTGATTCAGAAGAACTCACTCAGCCTGAGTCTCTGACTGTTCATCCTGATGCCGCTCTCACTATCAACTGTAAAGTCTCCTATTCAGTTACAAGCTATGGTACAGCCTGGATTCGTCAACCTGCAGGAAAAGCTCTGGAGTGGATTGGAGTTATCTGGAGCGGTGGAAGCACAGACTACAAGGATTCCCTGAAAAGCAAGTTCAGTATCAGCAGAGACACTTCCAGTAACACAATAACACTGAAAGGACAGAATATGAGAGCTGAAGACACAGCTGTGTATTATTGTGCCAGACACACAGTGACAGACGCTAACAAGATTCCTGTACAAAAACACCATCATCTCATTACAAATTATGTCTTTCAGATAATTGTACctaatcactaaaaataatttacacca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26829 False 387 TUCP 0.43 2 7949804 7950310
unassigned_transcript_276 True 537 V_gene_segment 0.57 2 7949761 7950417

Neighbor

gene id symbol gene type direction distance location
ptger1c ptger1c,LOC107757344,LOC107567231,LOC107672434,LOC107670435,LOC107711161,LOC107587998 coding upstream 141999 7801296 ~ 7807762 (+)
LOC122334406 LOC107587953 coding upstream 153108 7786116 ~ 7796653 (+)
chmp6a chmp6a,LOC107744992,LOC107599353,LOC107711234,LOC107672453,LOC108432238 coding upstream 294571 7649629 ~ 7655190 (+)
ttyh2l ttyh2l,LOC107744973,LOC107670532,LOC107599325,LOC107711233,LOC107672455,LOC107587999 coding upstream 300815 7619650 ~ 7648946 (+)
hs3st3b1a hs3st3b1a,LOC107711227,LOC107672504,LOC107587963,LOC107599323,LOC107744967 coding upstream 575297 7362916 ~ 7374464 (+)
LOC122331730 NA coding downstream 24126 7974543 ~ 7977890 (+)
srebf2 LOC107574638,LOC107745393,LOC107721684,LOC107572757 coding downstream 204954 8155371 ~ 8166377 (+)
nol12 nol12,LOC107676179 coding downstream 228097 8178514 ~ 8181737 (+)
LOC122339678 NA coding downstream 234131 8184548 ~ 8189293 (+)
triobpb triobp,LOC107574640,LOC107721687,LOC107661081 coding downstream 239036 8189453 ~ 8200478 (+)
G17976 LOC107744976,LOC107711219,LOC107599314 non-coding upstream 26132 7915862 ~ 7923629 (+)
G17973 LOC107693569,LOC107722887,LOC107673775,LOC107563216,LOC107599327,LOC107572241,LOC107693566,LOC107661871,LOC107661873,LOC107599328 non-coding upstream 49614 7899911 ~ 7900147 (+)
G17937 NA non-coding upstream 103716 7845224 ~ 7846045 (+)
G17936 si:dkey-210j14.3,LOC107672496,LOC107757375,LOC107711245,LOC107711244,LOC107670496 non-coding upstream 105544 7843581 ~ 7844217 (+)
G17934 NA non-coding upstream 106793 7842339 ~ 7842968 (+)
G17990 NA non-coding downstream 34063 7984480 ~ 8145025 (+)
G17993 LOC107566823,LOC107739961,LOC107574374,LOC107576777,LOC107659785,LOC107565530,LOC107742984,LOC107710146,LOC107725412,LOC107717634,LOC107655767,LOC107571898 non-coding downstream 38709 7989126 ~ 8092242 (+)
G17998 NA non-coding downstream 65220 8015637 ~ 8109769 (+)
G18016 NA non-coding downstream 152633 8103050 ~ 8103417 (+)
G18010 NA non-coding downstream 264835 8215252 ~ 8217217 (+)
LOC122341274 LOC107711242,LOC107672448,LOC107588011,LOC107757354,LOC107670494 other upstream 108092 7838956 ~ 7841669 (+)
slc27a1a slc27a1a,slc27a1,LOC107670527,LOC107757377,LOC107567246,LOC107711240,LOC107672489,LOC107587997 other upstream 128683 7808243 ~ 7821078 (+)
baiap2a baiap2a,LOC107672452,LOC107711237,LOC107670476 other upstream 224242 7656031 ~ 7725519 (+)
LOC122331592 LOC107744988 other upstream 358235 7583354 ~ 7591526 (+)
G17590 NA other upstream 1393011 6504915 ~ 6556750 (+)
G17985 ighv4-5 other downstream 437 7950854 ~ 7951364 (+)
LOC122341279 LOC107730542,LOC107679029,LOC107563335 other downstream 9654 7960071 ~ 7962976 (+)
G17988 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 other downstream 14332 7964749 ~ 7966194 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other downstream 106242 8056659 ~ 8059857 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other downstream 200326 8150743 ~ 8152894 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) LOC117598861 NA misc NC_047607.1 CM018553.1 21992460 ~ 21993141 (+)