LOC122341279 (LOC107730542,LOC107679029,LOC107563335)


Basic Information

Item Value
gene id LOC122341279
gene name LOC107730542,LOC107679029,LOC107563335
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7960071 ~ 7962976 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU26833
TGCTGCGTCTGAAACGCTCGCTCACATTTATGCGGAGCAAAAGTGTGGAGAACTTCTTCCAGCGTTCACAGAGCGATGCTTACCGACCGACAGAGCTCTTCTCTGGTGCCCTGCCTTCTTCCCCTGCCTCTGGTAACAGCAGTAATGTTTTGCCCTCCCCCAGCATCAGCTCTAGACCTGCTCCATTCGGTGTGCAGCCACGaccagcacaaacacactccttCCTTGAGCATGTGTTCCGTCGACCCACCAGCTGCAGTCTGTGCAAGCTCATTATTGCAGGCAACTCTAAACAGGGCCTGCGTTGTAGAACGTGTAAGATGGGAGCTCATCTTTGGTGTCTCTCTGAAGTCTCAGAGAAACCATGCCAAGGAAAGTCTGGCATGTTCAAGAGGAACTTAAGCACACCTGTACTGACCAATGATCAGTTATATGCTGTGAAGACACCGg
>XM_043234654.1
GTCTGAAACGCTCGCTCACATTTATGCGGAGCAAAAGTGTGGAGAACTTCTTCCAGCGTTCACAGAGCGATGCTTACCGACCGACAGAGCTCTTCTCTGGTGCCCTGCCTTCTTCCCCTGCCTCTGGTAACAGCAGTAATGTTTTGCCCTCCCCCAGCATCAGCTCTAGACCTGCTCCATTCGGTGTGCAGCCACGaccagcacaaacacactccttCCTTGAGCATGTGTTCCGTCGACCCACCAGCTGCAGTCTGTGCAAGCTCATTATTGCAGGCAACTCTAAACAGGGCCTGCGTTGTAGAACGTGTAAGATGGGAGCTCATCTTTGGTGTCTCTCTGAAGTCTCAGAGAAACCATGCCAAGGAAAGTCTGGCATGTTCAAGAGGAACTTAAGCACACCTGTACTGACCAATGATCAGTTATATGCTGTGAAGACACCGgTCCCCGGTGATCCCGTACGGCTCATGAACGCCTCCCTGTCCAAACACTACACTAGAACAGGAATGACCAAATAA

Function

NR:

description
PREDICTED: SH3 and cysteine-rich domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26833 False 450 TUCP 0.54 3 7960071 7962295
XM_043234654.1 True 518 mRNA 0.52 4 7960077 7962976

Neighbor

gene id symbol gene type direction distance location
ptger1c ptger1c,LOC107757344,LOC107567231,LOC107672434,LOC107670435,LOC107711161,LOC107587998 coding upstream 152309 7801296 ~ 7807762 (+)
LOC122334406 LOC107587953 coding upstream 163418 7786116 ~ 7796653 (+)
chmp6a chmp6a,LOC107744992,LOC107599353,LOC107711234,LOC107672453,LOC108432238 coding upstream 304881 7649629 ~ 7655190 (+)
ttyh2l ttyh2l,LOC107744973,LOC107670532,LOC107599325,LOC107711233,LOC107672455,LOC107587999 coding upstream 311125 7619650 ~ 7648946 (+)
hs3st3b1a hs3st3b1a,LOC107711227,LOC107672504,LOC107587963,LOC107599323,LOC107744967 coding upstream 585607 7362916 ~ 7374464 (+)
LOC122331730 NA coding downstream 11567 7974543 ~ 7977890 (+)
srebf2 LOC107574638,LOC107745393,LOC107721684,LOC107572757 coding downstream 192395 8155371 ~ 8166377 (+)
nol12 nol12,LOC107676179 coding downstream 215538 8178514 ~ 8181737 (+)
LOC122339678 NA coding downstream 221572 8184548 ~ 8189293 (+)
triobpb triobp,LOC107574640,LOC107721687,LOC107661081 coding downstream 226477 8189453 ~ 8200478 (+)
G17976 LOC107744976,LOC107711219,LOC107599314 non-coding upstream 36442 7915862 ~ 7923629 (+)
G17973 LOC107693569,LOC107722887,LOC107673775,LOC107563216,LOC107599327,LOC107572241,LOC107693566,LOC107661871,LOC107661873,LOC107599328 non-coding upstream 59924 7899911 ~ 7900147 (+)
G17937 NA non-coding upstream 114026 7845224 ~ 7846045 (+)
G17936 si:dkey-210j14.3,LOC107672496,LOC107757375,LOC107711245,LOC107711244,LOC107670496 non-coding upstream 115854 7843581 ~ 7844217 (+)
G17934 NA non-coding upstream 117103 7842339 ~ 7842968 (+)
G17990 NA non-coding downstream 21504 7984480 ~ 8145025 (+)
G17993 LOC107566823,LOC107739961,LOC107574374,LOC107576777,LOC107659785,LOC107565530,LOC107742984,LOC107710146,LOC107725412,LOC107717634,LOC107655767,LOC107571898 non-coding downstream 26150 7989126 ~ 8092242 (+)
G17998 NA non-coding downstream 52661 8015637 ~ 8109769 (+)
G18016 NA non-coding downstream 140074 8103050 ~ 8103417 (+)
G18010 NA non-coding downstream 252276 8215252 ~ 8217217 (+)
G17985 ighv4-5 other upstream 8707 7950854 ~ 7951364 (+)
LOC122331768 LOC107710248 other upstream 9654 7949761 ~ 7950417 (+)
LOC122341274 LOC107711242,LOC107672448,LOC107588011,LOC107757354,LOC107670494 other upstream 118402 7838956 ~ 7841669 (+)
slc27a1a slc27a1a,slc27a1,LOC107670527,LOC107757377,LOC107567246,LOC107711240,LOC107672489,LOC107587997 other upstream 138993 7808243 ~ 7821078 (+)
baiap2a baiap2a,LOC107672452,LOC107711237,LOC107670476 other upstream 234552 7656031 ~ 7725519 (+)
G17988 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 other downstream 1773 7964749 ~ 7966194 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other downstream 93683 8056659 ~ 8059857 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other downstream 187767 8150743 ~ 8152894 (+)
LOC122342110 wbp11,LOC107751605,LOC107678993 other downstream 297108 8260084 ~ 8563379 (+)
G18048 NA other downstream 550373 8513349 ~ 8742302 (+)

Expression


Co-expression Network