G17988 (si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827)


Basic Information

Item Value
gene id G17988
gene name si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7964749 ~ 7966194 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU26834
AGTCCGACACATCTCAAAGCATCTCAAAGCGGAGCGCATTTGTGATCTTTGTAGTTTCTCTGATAGGCAAAACTTTTCCAGCACTTGGTGCACGTGTACGGTTTTTTCCCCGTGTGAACGTGCATGTGCGCCTTCAAGTTGTTGGGCTGCGTGAAACTCTTCAAACAAATGTCACAGGTAAACGGCTTCTCCCCGGTGTGCACGAGCCGGTGCCTTTTCAGGTTGGCCGACAAATGAAACGCCTTCCCACACGTTTCGCACTTGTGCGGTTTTTCGCCGGTGTGGGTGCGCGCGTGCATCTTCAAAGAGCTCGACAGCTTGAACAGCTTCCCGCACGACGCGCACTCGTGAGGTCTTTCTCCCGAATGCAGAAACACGTGGGTTTTATACGAAGCCCTCAGAGAGAAGTCTTTGCCGCAGACGTCGCACCTGAAGGGTTTCTCTCCCGTGTGGAGCTGCGCGTGCATCCGGAGGGAGTGCGCGCTGCTGTACCTTCTGTCGCACAGCGCGCACGCGTGAGGCTTGCCGTCGCCCGAGTGCAGCTGCGAGTGCGCTTTTAACGCGTAGGCGGAGCTCAGCAGCTTCCCGCACACGTCGCAGCGCCGAGCGTTGCTCTTATCGCCCGCGTGTCCGCCCTGGCCGTGCGTGAGGATGTGGTTCCTCAGGACGTAATTATACTGGAACGTTTTCCCGCACATTTCGCACATGAACCGCTTTTCCCCGTGCACTCGCATGTGGCCTTTCAGGGTGCTCCTCTGGTTGAATCGCCTGCCGCACACCTCGCACACGTACGGCTTGTCGCCGGTGTGAATGAGGACGTGTCGTTTTAGAGTCCCGGAGAGCGCGAAGCTCTTCCCGCAGACGTCGCACGTGTGCGGCCTCTCGCCCGTGTGCACGCGCAGGTGGTGTTTCAGAAGCTTGTGATATTTGAAGCTCTTATTGCAGTGGCTGCATTTTATCGGCCTGTCGTTTGAATGGATCCTTTTGTGGTAGTTCAACGTGCCGATGAGGGAGAAGCACTTGCCACAGGTGTCGCATCTGTAGGGTTTCTCGCCCGTGTGCACCCTCTGGTGCATGTATAAACTCCTTTTGATCGTGAACCCCTGTCCGCAGGTTTCGCAGGCGAACGGTTTGACCTCGGCGTGGACGAGCTCGTGCGCCGCGAGGTCcctgaagctcttcccgcaggTAGCGCAGGGAAACTTCTGCTTCTCGGGCTTCTGCGAGTGCTTGCGAAGGTGGGTCTCCAGCGCTCTCTGCAGCGTGAATTTCTTTCCGCACTTTTCACAAGCGTGAGGCCTGGCGATTGAATGCACGCGTTTGTGCTGCACGAGAGAAAACATCTTCGGAAAGGCTTTCCCGCACTGATCGCATTCAAAAGACTGCTTTGATCGCGGGACTTCAGTTTGATTGCTTGACGTCTGTGAGGCTCCTTCCTGATCTCCA

Function

symbol description
si:dkey-182i3.10 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm.

NR:

description
PREDICTED: zinc finger protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26834 True 1446 TUCP 0.57 1 7964749 7966194

Neighbor

gene id symbol gene type direction distance location
ptger1c ptger1c,LOC107757344,LOC107567231,LOC107672434,LOC107670435,LOC107711161,LOC107587998 coding upstream 156987 7801296 ~ 7807762 (+)
LOC122334406 LOC107587953 coding upstream 168096 7786116 ~ 7796653 (+)
chmp6a chmp6a,LOC107744992,LOC107599353,LOC107711234,LOC107672453,LOC108432238 coding upstream 309559 7649629 ~ 7655190 (+)
ttyh2l ttyh2l,LOC107744973,LOC107670532,LOC107599325,LOC107711233,LOC107672455,LOC107587999 coding upstream 315803 7619650 ~ 7648946 (+)
hs3st3b1a hs3st3b1a,LOC107711227,LOC107672504,LOC107587963,LOC107599323,LOC107744967 coding upstream 590285 7362916 ~ 7374464 (+)
LOC122331730 NA coding downstream 8349 7974543 ~ 7977890 (+)
srebf2 LOC107574638,LOC107745393,LOC107721684,LOC107572757 coding downstream 189177 8155371 ~ 8166377 (+)
nol12 nol12,LOC107676179 coding downstream 212320 8178514 ~ 8181737 (+)
LOC122339678 NA coding downstream 218354 8184548 ~ 8189293 (+)
triobpb triobp,LOC107574640,LOC107721687,LOC107661081 coding downstream 223259 8189453 ~ 8200478 (+)
G17976 LOC107744976,LOC107711219,LOC107599314 non-coding upstream 41120 7915862 ~ 7923629 (+)
G17973 LOC107693569,LOC107722887,LOC107673775,LOC107563216,LOC107599327,LOC107572241,LOC107693566,LOC107661871,LOC107661873,LOC107599328 non-coding upstream 64602 7899911 ~ 7900147 (+)
G17937 NA non-coding upstream 118704 7845224 ~ 7846045 (+)
G17936 si:dkey-210j14.3,LOC107672496,LOC107757375,LOC107711245,LOC107711244,LOC107670496 non-coding upstream 120532 7843581 ~ 7844217 (+)
G17934 NA non-coding upstream 121781 7842339 ~ 7842968 (+)
G17990 NA non-coding downstream 18286 7984480 ~ 8145025 (+)
G17993 LOC107566823,LOC107739961,LOC107574374,LOC107576777,LOC107659785,LOC107565530,LOC107742984,LOC107710146,LOC107725412,LOC107717634,LOC107655767,LOC107571898 non-coding downstream 22932 7989126 ~ 8092242 (+)
G17998 NA non-coding downstream 49443 8015637 ~ 8109769 (+)
G18016 NA non-coding downstream 136856 8103050 ~ 8103417 (+)
G18010 NA non-coding downstream 249058 8215252 ~ 8217217 (+)
LOC122341279 LOC107730542,LOC107679029,LOC107563335 other upstream 1773 7960071 ~ 7962976 (+)
G17985 ighv4-5 other upstream 13385 7950854 ~ 7951364 (+)
LOC122331768 LOC107710248 other upstream 14332 7949761 ~ 7950417 (+)
LOC122341274 LOC107711242,LOC107672448,LOC107588011,LOC107757354,LOC107670494 other upstream 123080 7838956 ~ 7841669 (+)
slc27a1a slc27a1a,slc27a1,LOC107670527,LOC107757377,LOC107567246,LOC107711240,LOC107672489,LOC107587997 other upstream 143671 7808243 ~ 7821078 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other downstream 90465 8056659 ~ 8059857 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other downstream 184549 8150743 ~ 8152894 (+)
LOC122342110 wbp11,LOC107751605,LOC107678993 other downstream 293890 8260084 ~ 8563379 (+)
G18048 NA other downstream 547155 8513349 ~ 8742302 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other downstream 578097 8544291 ~ 8551151 (+)

Expression


Co-expression Network