G17998


Basic Information

Item Value
gene id G17998
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8015637 ~ 8109769 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU26856
atcacactatagagactgtcatgaatgaggggtctgaggcgtgtggatccattcgcaggcttttattggctgaaggcatcaaggtcaaagcaggcagacgcAGCATAAGTATAAggggcaaggcaacaacagaatccaaaaacaggcagaggtcgggtcaggcagcaaacaatcaaagaatcaaagacaggcagggttAAAACCAAAGAATCGGTGACTAGGGAAACGCTAGGCTAACTAgaagcaaacaaacagacaatcaatcaatgcaacctgcagGTGAGAGGCCTGCTTCAGAGTTTATAGTCttgaaacaggaagtagcaggggaagtgatcacagatcatccagaagtaagggctccctctgctgacTTGGTGACAGAGACTGCTTTTAGAataaaaaccaaattaaaagcaataatttaattaatgttcaacaaataaaaactacctataataCAAATAAGCAACCAATAAAACTTGGCTTACTGAAttttagatcactttccacaaaagcactttatatatatgatttgatcaaagatcagaagctagatttgctttgtttgacaggaacctggctaaaacctgatgaatatattactctaaatgaatctaccccccaaaattactgctatagaaatgagccacgtttaaaaggtaaggGGGAGGTGTGTTGCTGCAATTTATAAAAGTATCTCAGTATTTGATAAAtcgactgcgggcggcagatccttttcctatctagcacctaaactctggaacaatctccctaactctgttcgggaagcagacacactctgccagtttaaatctagattaaagacacatctttttaacttagcctacacataacacaccaacacactttttattattcaaatccgttaaaggatttttaggctgcattacttagatttgctggatccgggaacactactcctacaatacgatgtacttgtgacattgtaaaaagaatagcatttacgctaatattagtcctgtctctttcttaatctgtttcagttTCTATCCaaactagatggtggatcagcacccagagattatgttcagtcataaaagtcatttacactatctgacacagctgagtttaaaattgaactaaaactcccaaggttttttttctccatttttataatcaaaacatcatgtttttaatacagtgtttattacagtatttagtCGTCAGTTTTCTGGTCGGATGTTCAGTCTCTTATTCATGTGATcttgatgaaaaatgaaagcaGGAAGATTCAGATCAAAagattattgattattgattgATAAGATTCTCAGAGAGgaataattccaaaaaaaagggaagagtgtgtgagtgaaggTGGTAGTgaatgtgtgtagatgtgtgttaGTTACAAGATCAGAGAATGACACCATTCCTCTGTCATAGTCCAGATACACTCTCACACGATCAAGATTACGTTTAACACCAaaaccagaaccagaaccaaAACCTGGAAACCACCCGTATGacacaaaccagacatcagatttgaagaaatccTCTCCCTTCCTCTGGTTTGATGCCGTAGTTACTCCCAGTCGCCAGTATTTACTCTCCTTAACCTCCACATCCCAGCAGTGTGTTCCTGAGTTAAACCCCTCTGAACCCACAACACAGGCATAATAGTCGAATCTCTCAGGATTATCAGGAACAGACTGACTGTTGTAGATCCGTCTCACACTGGTCAGATCATCAGAGAGAAGAAGATCTGGATgagctgtgtttggatccaaaATCACTGAAGCTGATGATACAC

Function

GO: NA

KEGG:

id description
ko03070 Bacterial secretion system
ko02024 Quorum sensing

RNA

RNA id representative length rna type GC content exon number start site end site
TU26856 True 1801 lncRNA 0.49 2 8015637 8109769

Neighbor

gene id symbol gene type direction distance location
LOC122331730 NA coding upstream 37747 7974543 ~ 7977890 (+)
ptger1c ptger1c,LOC107757344,LOC107567231,LOC107672434,LOC107670435,LOC107711161,LOC107587998 coding upstream 207875 7801296 ~ 7807762 (+)
LOC122334406 LOC107587953 coding upstream 218984 7786116 ~ 7796653 (+)
chmp6a chmp6a,LOC107744992,LOC107599353,LOC107711234,LOC107672453,LOC108432238 coding upstream 360447 7649629 ~ 7655190 (+)
ttyh2l ttyh2l,LOC107744973,LOC107670532,LOC107599325,LOC107711233,LOC107672455,LOC107587999 coding upstream 366691 7619650 ~ 7648946 (+)
srebf2 LOC107574638,LOC107745393,LOC107721684,LOC107572757 coding downstream 45602 8155371 ~ 8166377 (+)
nol12 nol12,LOC107676179 coding downstream 68745 8178514 ~ 8181737 (+)
LOC122339678 NA coding downstream 74779 8184548 ~ 8189293 (+)
triobpb triobp,LOC107574640,LOC107721687,LOC107661081 coding downstream 79684 8189453 ~ 8200478 (+)
ndufa6 ndufa6 coding downstream 91830 8201599 ~ 8207081 (+)
G17976 LOC107744976,LOC107711219,LOC107599314 non-coding upstream 92008 7915862 ~ 7923629 (+)
G17973 LOC107693569,LOC107722887,LOC107673775,LOC107563216,LOC107599327,LOC107572241,LOC107693566,LOC107661871,LOC107661873,LOC107599328 non-coding upstream 115490 7899911 ~ 7900147 (+)
G17937 NA non-coding upstream 169592 7845224 ~ 7846045 (+)
G17936 si:dkey-210j14.3,LOC107672496,LOC107757375,LOC107711245,LOC107711244,LOC107670496 non-coding upstream 171420 7843581 ~ 7844217 (+)
G17934 NA non-coding upstream 172669 7842339 ~ 7842968 (+)
G18010 NA non-coding downstream 105483 8215252 ~ 8217217 (+)
G18025 fam234b,LOC107576065 non-coding downstream 106755 8216524 ~ 8217031 (+)
LOC122331402 NA non-coding downstream 202620 8312389 ~ 8314490 (+)
G18055 NA non-coding downstream 364524 8474293 ~ 8490417 (+)
G18092 NA non-coding downstream 561892 8671661 ~ 8675886 (+)
G17988 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 other upstream 49443 7964749 ~ 7966194 (+)
LOC122341279 LOC107730542,LOC107679029,LOC107563335 other upstream 52661 7960071 ~ 7962976 (+)
G17985 ighv4-5 other upstream 64273 7950854 ~ 7951364 (+)
LOC122331768 LOC107710248 other upstream 65220 7949761 ~ 7950417 (+)
LOC122341274 LOC107711242,LOC107672448,LOC107588011,LOC107757354,LOC107670494 other upstream 173968 7838956 ~ 7841669 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other downstream 40974 8150743 ~ 8152894 (+)
LOC122342110 wbp11,LOC107751605,LOC107678993 other downstream 150315 8260084 ~ 8563379 (+)
G18048 NA other downstream 403580 8513349 ~ 8742302 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other downstream 434522 8544291 ~ 8551151 (+)
LOC122341292 LOC107729471,LOC107687638 other downstream 870822 8980591 ~ 8988810 (+)

Expression


Co-expression Network