LOC122342110 (wbp11,LOC107751605,LOC107678993)


Basic Information

Item Value
gene id LOC122342110
gene name wbp11,LOC107751605,LOC107678993
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8260084 ~ 8563379 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU26907
ctggtttctcccaaggtttttcttcttcattctgtatggatggggttctggttcctctgtcttctttgttggggacacttaacttctagagattatcattgaattgattccagagaccgtctctgcatttaataacaaattgttattatttttgaatttgaaaagtATGTTTACTTCTACCATCAATCAAGTGattgtggaaataaaaaaaaataatttgcatttttttctttttatatcaaGATGTATTCCATCCATGCCTCCTTATTTTCTTACTCGTTTTGCTAATACATGTTATACgttttataattctttttattttatattaggcaTAGGCTATGgcatggtgtatttttattttcctaatAAAAGTTCTATGTTCTGCTTTGTTACTTGAATTGGATGCAAGCAATTGCCGCTaatgtaaaagtgaaagtaaaatgcacttttttagatttccatttttacatttaaaagtgaatGACAGTGAGGAAAATATAATTAGGAGATTATGATTTTCatctaaaagagacaaaaaataatcagatctaacagtttttaatgcttttttgtaCTTTCCCAAcagactatattaaaaaaaaaaaaacactaactctagttttatttttttccacctgCTCTTCATTTTCCGGGATGCTGTCTTTAGTGAGCGAAtgtacttgttttctttcatctgtctTAAGTATAAAGGAGCCACTGTATCTAAAGTTTGGGAAAAGAGAGAGCACATAGTATCTGTTACATCAAGTTTTCTGCACTATTGGATGTGGTAACGAACCAAGATAAATCaggaaaatttaaaaaaatgtgtgtgtttggtgctgATTACAGGAATGCCCCCGGCCCCTCCGCCCCGTATGGCTCCACCCCTCTCTCTGTTCCCGCCTCCACTGAATCCCAACGTGCTCAGCGCTCCACCCAGCATCCGGCAGAAGTCACCTGTGGCAACGACCTCCTCCAGCGACTCCGCCCCCCTCATCCCACCGGCCCGAGGCTCCGCCCACCAGATGCCACCCCCTCCTGGCACTACGCCCACCATCGAGAAGCGAGCCACGGTCTCGGGCCCCGGGGCGTCCTTGGCCCCGCCAGGTGGAGCCACCATCTCAGCCAAACCACAGATCATCAACCCCAAGACGGAGGTGACCCGCTTTGTGCCCACGGCGCTCCGTGTGCGCAGGGACCGGGCCCCGGGCCGCAGGGACGAAGAGCCACCCAAACCAGCCGCCGCAGCCAAGCCCAGCCAGCCGCCCGGAGCTGCGCCGCCCGGCCTCAAGACCAAGGACCAGATGTACGAGGCCTTCATGCGCGAGATGGAGGGCCTGCTGTGAGCTGCTGTACTTTCATAAGTGTGTTTTTACCTTCAGATGTGAATAAATCTCAGATGTCCAT
>XM_043235902.1
GGAAGTGGCATGCTCAGGAGCGGTGACGTGTTTCCGTTTATTGCAGAAAAGATGGCTAGCGCTTTTGAATGCGTTTACTGAGTCAGAAACGTGAATATTGGATATCTTTTTTAAGAGATTGAGgTGAAGCTGACCGTCTGCAGTCATGGGTCGGCGCTCTACCTCCTCCACCAAGAGTGGGAAGTTCATGAACCCCACGGATCAGGCCAGGAAGGAGGCGCGCAAGAGAGAGCTCAAGAAGAACAAGAAGCAGAGGATGATGGTCCGAGCAGCAGTGTTGAAGATGAAAGACCCACGTCAGATCATCCGAGACATGGAGAAACTTGATGAAATGGagTTCAATCCGGTGCAGCAGCCGCTGCTGAATGAGAAAGTTCTGCGAGACAAACGTAAGAAGCTGCGTGAGACGTTTGAGCGAATCGTCCGTCTGTACGAGCGAGAGAATCCAGAGATGTACAAAGAGCTGCGCAAGCTGGAGGTGGAGTACGAGACCAAGAGAGGACAGCTGTCACTCTACTTCGACTCCgtcaagAATGCTGAATCTGTGGAGGTGGACAGTATTCCTCTTCCAGACATGCCTCACGCTCCATCCAGCATCCTGATCCAGGACATTCCCCTTCCTGGAGCTCAGCCACCCTCCATCCTGAAGAAGAACTCGGCCCTCGGGAAGGGCTCAGCGTTGTCAGCAGCCGCTCTAGCAGGAGTTCCTCGTCTCCCGCCAGGACGCAAACCTCCGGGACCCCCGCCGGGGCCACCGCCTGCACAGGTCCTGCAGCTATACGCTAACACCCGCCGCACAGAAGGCGGCGGGTCAGACTCTGAGATGATGGACACCGGAGGGAGAGACAGCGACAGAGACAGCGACGCAGACGACGACAGCGACTCGCAGGATGATAGCGGCGCAGAGAGAGACGACGCAGATGTTGACCCCAGAATGATGTCTGATCGCCATGGCGACAGAGACGAGGAGCGCGACCGGGGCGATAAACACACGGGTCGCAGCGTACGATTCGCTGACATGCCTCCGCCcaaagagaagaggaagaggagggtgaTGAAGACGAAGAGCATCACTCCACTGCAGGCCATGATGCTTCGGATGGCAGGTCAGTCTATCccggaggatgaggaggaggacgaCGAAGAGGAGTACACAGACTCTGAGGAGTCGGATGCTGAGGATCAGATCTCCACAGAAGCCACTCAGTCATTGGTCAATCCCAGACTTTCTGTTCCAGCTGCACCAATGGCAGCACAGCAGCCTCCCCCACACATGCAGGCTCCACCAATCACAGGGCCACCTCCTTTAGGACCACCTCCTGCTCCTCCAATGAGGCCTCCGGGACCTCCGTCAGGACCGCCCCCTGGACCACCTCCCGGTGCTCCTCCTTTCCTGAGGCCCCCTGGACTCCCTGCGGCCCTCAGGGGCCCCATGCCACGCATGCTGCCTCCGGGGCCCCCTCCAGGGCGACCACCCGGACCCCTCCTGGACCCCACCAGGTCTGCCCCCGGCCCCCAGAGGACCCCACCACGCCTGCCGCCCCAGCCcctggtgaGAATGCCCCCGGCCCCTCCGCCCCGTATGGCTCCACCCCTCTCTCTGTTCCCGCCTCCACTGAATCCCAACGTGCTCAGCGCTCCACCCAGCATCCGGCAGAAGTCACCTGTGGCAACGACCTCCTCCAGCGACTCCGCCCCCCTCATCCCACCGGCCCGAGGCTCCGCCCACCAGATGCCACCCCCTCCTGGCACTACGCCCACCATCGAGAAGCGAGCCACGGTCTCGGGCCCCGGGGCGTCCTTGGCCCCGCCAGGTGGAGCCACCATCTCAGCCAAACCACAGATCATCAACCCCAAGACGGAGGTGACCCGCTTTGTGCCCACGGCGCTCCGTGTGCGCAGGGACCGGGCCCCGGGCCGCAGGGACGAAGAGCCACCCAAACCAGCCGCCGCAGCCAAGCCCAGCCAGCCGCCCGGAGCTGCGCCGCCCGGCCTCAAGACCAAGGACCAGATGTACGAGGCCTTCATGCGCGAGATGGAGGGCCTGCTGTGAGCTGCTGTACTTTCATAAGTGTGTTTTTACCTTCAGATGTGAATAAATCTCAGATGTCCATTCA

Function

symbol description
wbp11 Predicted to be involved in mRNA cis splicing, via spliceosome. Predicted to act upstream of or within RNA splicing; mRNA processing; and rRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of spliceosomal complex. Orthologous to human WBP11 (WW domain binding protein 11).

NR:

description
PREDICTED: WW domain-binding protein 11, partial

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12866 WBP11, NPWBP; WW domain-binding protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
TU26907 False 1410 TUCP 0.43 2 8260084 8563376
XM_043235902.1 True 2117 mRNA 0.61 12 8557678 8563379

Neighbor

gene id symbol gene type direction distance location
rrp7a LOC107673310,LOC107591059 coding upstream 30470 8227784 ~ 8229614 (+)
poldip3 poldip3,LOC107661083,LOC107580331,LOC107714893,LOC107666602,LOC107579899 coding upstream 32730 8219924 ~ 8227354 (+)
ndufa6 ndufa6 coding upstream 53003 8201599 ~ 8207081 (+)
triobpb triobp,LOC107574640,LOC107721687,LOC107661081 coding upstream 59606 8189453 ~ 8200478 (+)
LOC122339678 NA coding upstream 70791 8184548 ~ 8189293 (+)
ddx47 ddx47,LOC106601200 coding downstream 2021 8565400 ~ 8575713 (+)
LOC122341890 grin2bb,LOC107725336,LOC107573036,LOC107698059,LOC108425688,LOC107758357,LOC107661082,LOC107676879 coding downstream 52901 8616280 ~ 8660516 (+)
LOC122330982 emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994 coding downstream 141065 8704444 ~ 8708282 (+)
LOC122342001 cpt1cb,LOC107747872,LOC107667163,LOC100333227,LOC107730771,LOC107689673 coding downstream 271750 8835129 ~ 8854765 (+)
LOC122333359 hs3st4,LOC107703335,LOC107568293,LOC107741793,LOC106601107,LOC105013403,LOC106607349 coding downstream 412945 8976324 ~ 8979876 (+)
G18010 NA non-coding upstream 42867 8215252 ~ 8217217 (+)
G18025 fam234b,LOC107576065 non-coding upstream 43053 8216524 ~ 8217031 (+)
G17990 NA non-coding upstream 115059 7984480 ~ 8145025 (+)
G17998 NA non-coding upstream 150315 8015637 ~ 8109769 (+)
G18016 NA non-coding upstream 156667 8103050 ~ 8103417 (+)
G18092 NA non-coding downstream 108282 8671661 ~ 8675886 (+)
G18261 hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621 non-coding downstream 317819 8881198 ~ 8882122 (+)
G18303 NA non-coding downstream 686720 9250099 ~ 9250630 (+)
G18305 NA non-coding downstream 698591 9261970 ~ 9262239 (+)
G18425 LOC105357980 non-coding downstream 850265 9413644 ~ 9414007 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other upstream 107190 8150743 ~ 8152894 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other upstream 200227 8056659 ~ 8059857 (+)
G17988 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 other upstream 293890 7964749 ~ 7966194 (+)
LOC122341279 LOC107730542,LOC107679029,LOC107563335 other upstream 297108 7960071 ~ 7962976 (+)
G17985 ighv4-5 other upstream 308720 7950854 ~ 7951364 (+)
LOC122341292 LOC107729471,LOC107687638 other downstream 417212 8980591 ~ 8988810 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other downstream 446671 9010050 ~ 9012178 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other downstream 575088 9138467 ~ 9183290 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other downstream 621020 9184399 ~ 9185660 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other downstream 1129570 9692949 ~ 9697915 (+)

Expression


Co-expression Network