LOC122331854 (mgp,LOC107574611,LOC107569876)


Basic Information

Item Value
gene id LOC122331854
gene name mgp,LOC107574611,LOC107569876
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8544291 ~ 8551151 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU26987
GTAAAAAACCACCAGAGATTGAAGCAGAAGATTCACAGAGACAGCTCTTCAGacgAATCTGTTGCAGTCATGAGTGTTACTCTtcactgtgtgtttctgtgtgtttctctggcACTTGGCGCTTGTTATGATTCTCAGGAGAGCCGCGAGTCATACGAGGtatttGTGAATCCATATCAGGCAAACACTTTCATGAGGAGTCCACAAAATGCCAACTACAACCAATACTTCTACAGGaggatGAAGTCTCCGGCCGAGCGGCGGGCCGAGATCTGTGAGGATTATTCGCCGTGTCGTCTCTTTGCGCAGCGCTACGGATCACCAATGGCCTATCAAGTGTACTTCGGCGCTCAGCAGCTCAAGCCCAATCCACACGTGCATCACTACTAAGTCCCGCCTCCACATTTGCATTTGACCAATCAGCCTATTCCTTTGAATAATGCCTTACAGACCCATTAAACCCAGACAcctatttacacatttataagtGCTTTTGTGTGTCACAGGTTTACTACTAATCTCCTCTCGCTCTCTGACGAAGGGCCAGTTTGCTCAGATATTAACACAGCTACGCTTTTGCTGATATATGCTCAATTACTATTCAAAGCTAAAATCACGAAGGTGCCTGCattgacattttgcatttcttaaTAGATGCAAAAATTAGTTGTccaatgaaaacatttccagacaagaaatttgttttttaatctcgTCACAGATGTGTTCATTTGTTAATCACAATTAAACTCCTGCAAACCTGAGCTG
>XM_043229399.1
GGTTTCTCTGTCTGTGTACTCTCTCTGTCTGACTCCAGatatgacacaaacacactcctaCACCTGTGAAGTCatccgtctgtgtgtgtgtttgtgtgtgagctaATGGTGTGACGGTGGAAAAAGTTTGGGGTGGAGGGTGTGAAGTGCTTATAAGAGCTGGAGAATCGTAAAAAACCACCAGAGATTGAAGCAGAAGATTCACAGAGACAGCTCTTCAGacgAATCTGTTGCAGTCATGAGTGTTACTCTtcactgtgtgtttctgtgtgtttctctggcACTTGGCGCTTGTTATGATTCTCAGGAGAGCCGCGAGTCATACGAGGtatttGTGAATCCATATCAGGCAAACACTTTCATGAGGAGTCCACAAAATGCCAACTACAACCAATACTTCTACAGGaggatGAAGTCTCCGGCCGAGCGGCGGGCCGAGATCTGTGAGGATTATTCGCCGTGTCGTCTCTTTGCGCAGCGCTACGGATCACCAATGGCCTATCAAGTGTACTTCGGCGCTCAGCAGCTCAAGCCCAATCCACACGTGCATCACTACTAAGTCCCGCCTCCACATTTGCATTTGACCAATCAGCCTATTCCTTTGAATAATGCCTTACAGACCCATTAAACCCAGACAcctatttacacatttataagtGCTTTTGTGTGTCACAGGTTTACTACTAATCTCCTCTCGCTCTCTGACGAAGGGCCAGTTTGCTCAGATATTAACACAGCTACGCTTTTGCTGATATATGCTCAATTACTATTCAAAGCTAAAATCACGAAGGTGCCTGCattgacattttgcatttcttaaTAGATGCAAAAATTAGTTGTccaatgaaaacatttccagacaagaaatttgttttttaatctcgTCACAGATGTGTTCATTTGTTAATCACAATTAAACTCCTGCAAACCTGA

Function

symbol description
mgp Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cartilage development; cell differentiation; and ossification. Predicted to be located in collagen-containing extracellular matrix and extracellular region. Predicted to be active in extracellular matrix. Is expressed in caudal fin; gill filament; sensory system; skeletal system; and trabecular layer. Human ortholog(s) of this gene implicated in arteriosclerosis; calcinosis; and myocardial infarction. Orthologous to human MGP (matrix Gla protein).

NR:

description
PREDICTED: matrix Gla protein

GO:

id name namespace
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26987 False 768 TUCP 0.43 5 8544460 8551151
XM_043229399.1 True 933 mRNA 0.44 5 8544291 8551147

Neighbor

gene id symbol gene type direction distance location
LOC122341287 LOC107758354,LOC107569871 coding upstream 46012 8493695 ~ 8498279 (+)
LOC122341286 NA coding upstream 50065 8493421 ~ 8494226 (+)
wbp2nl wbp2nl,LOC107569878,LOC107661077,LOC107670540,LOC107749952,LOC107568364 coding upstream 243531 8296132 ~ 8300760 (+)
rrp7a LOC107673310,LOC107591059 coding upstream 314677 8227784 ~ 8229614 (+)
poldip3 poldip3,LOC107661083,LOC107580331,LOC107714893,LOC107666602,LOC107579899 coding upstream 316937 8219924 ~ 8227354 (+)
LOC122341872 bglap,LOC107746533,LOC107676398 coding downstream 935 8552086 ~ 8556310 (+)
ddx47 ddx47,LOC106601200 coding downstream 14249 8565400 ~ 8575713 (+)
LOC122341890 grin2bb,LOC107725336,LOC107573036,LOC107698059,LOC108425688,LOC107758357,LOC107661082,LOC107676879 coding downstream 65129 8616280 ~ 8660516 (+)
LOC122330982 emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994 coding downstream 153293 8704444 ~ 8708282 (+)
LOC122342001 cpt1cb,LOC107747872,LOC107667163,LOC100333227,LOC107730771,LOC107689673 coding downstream 283978 8835129 ~ 8854765 (+)
G18055 NA non-coding upstream 53874 8474293 ~ 8490417 (+)
LOC122331402 NA non-coding upstream 229801 8312389 ~ 8314490 (+)
G18010 NA non-coding upstream 327074 8215252 ~ 8217217 (+)
G18025 fam234b,LOC107576065 non-coding upstream 327260 8216524 ~ 8217031 (+)
G18016 NA non-coding upstream 440874 8103050 ~ 8103417 (+)
G18092 NA non-coding downstream 120510 8671661 ~ 8675886 (+)
G18261 hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621 non-coding downstream 330047 8881198 ~ 8882122 (+)
G18303 NA non-coding downstream 698948 9250099 ~ 9250630 (+)
G18305 NA non-coding downstream 710819 9261970 ~ 9262239 (+)
G18425 LOC105357980 non-coding downstream 862493 9413644 ~ 9414007 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other upstream 391397 8150743 ~ 8152894 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other upstream 484434 8056659 ~ 8059857 (+)
G17988 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 other upstream 578097 7964749 ~ 7966194 (+)
LOC122341279 LOC107730542,LOC107679029,LOC107563335 other upstream 581315 7960071 ~ 7962976 (+)
G17985 ighv4-5 other upstream 592927 7950854 ~ 7951364 (+)
LOC122341292 LOC107729471,LOC107687638 other downstream 429440 8980591 ~ 8988810 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other downstream 458899 9010050 ~ 9012178 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other downstream 587316 9138467 ~ 9183290 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other downstream 633248 9184399 ~ 9185660 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other downstream 1141798 9692949 ~ 9697915 (+)

Expression


Co-expression Network