LOC122341278 (adgrl1,LOC107711219,LOC107599314,LOC107602690,LOC107661818,LOC107744976)


Basic Information

Item Value
gene id LOC122341278
gene name adgrl1,LOC107711219,LOC107599314,LOC107602690,LOC107661818,LOC107744976
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7920404 ~ 7945973 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU27045
GATCTAGAGGTGCGCGTGTTGAACACAGAGACAGAGTCCCAGGATCTGTCGTTCCCTCAAAACGGCCCCAGTGACAGCAGCATCCAGCTCTCGGCCTCCACCTTCAAACAGTACAGCCGCAACGGTCAGGTAAAAGTGGTCTTTGTGCTTTATAAGAATCTGGGTTCGTTCCTGTCCACTGAAAACGCCACTGTGAAGATGGAAATGGAGGCGGGGCCTGGTGGGCGGGGCCTGGCAGTGAATTCGCACGTCATAGCAGCGTCCATCAATAAGGAGTCCAGTCGAGTGTTTCTCACCGAGCCTGTGGTGTTCACCCTTAGACATTTACAGCTGGAGAATCATTTCAGCCCAAACTGTTCATTCTGGAACTACTCCGAGCGTTCGATGACGGGCCAGTGGTCATCTCAGGGCTGCAGGCTGATGGAAACCAACAGCACGCACACAACTTGTTCTTGCAGCCATCTAACCAACTTCGCCGTGCTCATGGTGCACCACGAACCCGACTATCCAGGCAGGATGCACGAGTTGATCCTCTTTGTGATCACATGGGTGGGCATCGTCATTTCGCTGGTGTGTCTCGCCATCTGTATCTCCACCTTCTGCTTCCTGCGAGGCCTGCAGACCGACCGCAACACCATCCACAAGAACCTGTGCATCAACCTCTTCATCGCCGagctcctcttcctcatcgGCATCGACAAGACGCAGTACCACATTGCATGCCCCATTTTTGCGGGTCTGCTACATTTCTTCTTCCTGGCTGCGTTCTCCTGGATGTGTCTGGAGGGAATCCAGCTGTATCTGATGCTGGTGGAGGTCTTTGAGAGCGAATACTCCCGAAAGAAATACTACTACCTATGCGGCTACTGCTTTCCCGCCCTGGTGGTGGGCATCTCGGCAGCCATTGACTATCGCAGCTATGGGACAAAAAAAGCGT
>XM_043234653.1
ctatctatctatctatctatccatctatctttgCTTGCACACACTCTTATAAtgacattgtattttattttcatcttttgaGAATGAAatttctctttctcacacacacaggcactcaTGATACAGCAATAGGTAGTGTAagacgtgtgtttgtgttttgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtagaatagATCTGTTCATTAGATCTATTCTGTACTAGACTAATACACTTCCTCCTCTACTCCTGCTCATCTGctccgctctctctttctccgtctctagtttttgtttgtcctgGAACATTAATGCGAGTGCTGGAGCCCAGTTCTGTGAGGGAGGCGGAGCATCAGTCAGGGGCGTGGTGTAAAGACCCTCTGCAAGCGGGCGATAGGCTATACGTGATGCCCTGGACGCCCTATCGCACAGATGCGCTGCATGAATACGCTTCGTGGGATGACTACATCCAAAACAGAGTCACCACCACTTATAAATTGCCGAGTCGTGTGGACGGCACCGGTTTCGTCGTGTACGATGGAGCTGTGTTCTACAATAAGGAACGCACACGCAACATTGTGAAATACGACCTGCGAACTCGCATCAAGAGCGGCGAAGCTATTATCGCTACCGCCAATTATCACGACACGTCGCCATACCGCTGGGGCGGGAAATCCGACATCGACCTAGCCGTGGACGAACACGGCCTCTGGGTCATATACGCCACTGAAGCCAACAGCGGACGCCTGGTCGTTAGTCAGGTGAACCCGTACACGCTGCGGTTCGAGGGCACGTGGCAGACCAGCTTCGAGAAGCGCATGGCGTCGGATGCGTTCGTGGCGTGTGGCATCCTGTACGCCGTTCGCTCCGTGTACCAGGACGACGACAGCGAGGTGGGCGGGGACCTGATCCTGTACGCCTACGACACGCGGCGTAACCGCGAGGAGCCGGTGAGGATCCCCTTCCCCAACCCGTACCAGCACATCTCCTCTATCAGCTACAACCCCCGAGACAACCAGCTGTACGTCTGGAACAACTACATCGTCCTGCGGTACCCGCTGGAGTTCAGCCCGCCGCAGCCCACCACAGACCCTCTTTCGACGCCTCTTCTCTCCACGACTCCACCGAGTGCGCTCTCCACCACCGTGTCCATGGGCTTCAGCCCCAGCTCCGTCCCGTCTGTGACGTTCCACCCGGTGGGGGCTATAAACCGGGCTCCGGCCGGGCGGCCCATCACAGCCACGGTCCCGGTGACCGTCAGGCCCCCCCGCCGGCCACAGGGGCCCCGCACACCCATGTGTGAGGGCCGGGTGACTCGCGGGGTCCAGTGGCCTCCGACTCATCGAGGAGAGACGGTGGAGAGGCCCTGTCCCAAAGGATCGCTCGGTATCGCCTCTTATCAGTGTATGGCTGATGACGTGGTGTGGAACTCCAGAGGCCCTGACCTCAGCAACTGCACCTCGCCCTGGGTCAACCAGGTCGCTCAGAAGATCAAGAGCGGGGAAAACGCAGCACATATCGCCGCTGTACTTGTCAATCACACACGAGGGCGGGTCTACGCCggtgatgtcacttcctccGTGCGCCTGATGGAGCAGCTGCTGGACATTTTGGACTCACAGCTACAGGCGCTGCGTCCCGGAAACAAGGAGTCGGCCACACGCAACTACAACAAGCTTCAGAAGAGAGAGCGGACCTGTCGAGCGTTTATTCAGgcggTGGTGCAGACGGTGGATAACCTGCTGCGTCTGGAGGCTCTGGAGTCGTGGCAGGACATGAACGTGACCGAACAGTCTCACACCGCCACGATGCTGCTGGACGTGATGGAGAAAGGAGCGTTTCTTCTGGCTAATAACCTGTACGGGGGTCACTTCAGCGACCGCGCGCCCAACGTCGATCTAGAGGTGCGCGTGTTGAACACAGAGACAGAGTCCCAGGATCTGTCGTTCCCTCAAAACGGCCCCAGTGACAGCAGCATCCAGCTCTCGGCCTCCACCTTCAAACAGTACAGCCGCAACGGTCAGGTAAAAGTGGTCTTTGTGCTTTATAAGAATCTGGGTTCGTTCCTGTCCACTGAAAACGCCACTGTGAAGATGGAAATGGAGGCGGGGCCTGGTGGGCGGGGCCTGGCAGTGAATTCGCACGTCATAGCAGCGTCCATCAATAAGGAGTCCAGTCGAGTGTTTCTCACCGAGCCTGTGGTGTTCACCCTTAGACATTTACAGCTGGAGAATCATTTCAGCCCAAACTGTTCATTCTGGAACTACTCCGAGCGTTCGATGACGGGCCAGTGGTCATCTCAGGGCTGCAGGCTGATGGAAACCAACAGCACGCACACAACTTGTTCTTGCAGCCATCTAACCAACTTCGCCGTGCTCATGGTGCACCACGAACCCGACTATCCAGGCAGGATGCACGAGTTGATCCTCTTTGTGATCACATGGGTGGGCATCGTCATTTCGCTGGTGTGTCTCGCCATCTGTATCTCCACCTTCTGCTTCCTGCGAGGCCTGCAGACCGACCGCAACACCATCCACAAGAACCTGTGCATCAACCTCTTCATCGCCGagctcctcttcctcatcgGCATCGACAAGACGCAGTACCACATTGCATGCCCCATTTTTGCGGGTCTGCTACATTTCTTCTTCCTGGCTGCGTTCTCCTGGATGTGTCTGGAGGGAATCCAGCTGTATCTGATGCTGGTGGAGGTCTTTGAGAGCGAATACTCCCGAAAGAAATACTACTACCTATGCGGCTACTGCTTTCCCGCCCTGGTGGTGGGCATCTCGGCAGCCATTGACTATCGCAGCTATGGGACAAAAAAAGCTGTGTCCTTCATTATCATGTTGAACCTGGTGTTCCTCATGATAACACTTCACAAGATGGTCCGTAACTCATCCGCCCTCAAACCCGACTCCAGCCGCCTGGACAACATCAAGTCCTGGGCTCTTGGGGCTATCGCACTGCTCTTCCTCTTGGGTCTGACTTGGGCCTTCGGCCTCCTCTTCATCAATGAGAACACAGTCATCATGGCTTATCTTTTCACTACCTTTAATGCCTTCCAGGGCATGTTCATCTTTATCTTCCACTGTGCTCTGCAGAAAAAGGTGCATAAGGAGTACAGCAAGTGCCTCCGTCATTCTTACTGCTGCAGCCGTACCTCCACCACGAGCTCTCATGGATCGCTGAAGAATTCTGCCCTTCGTGCCAACAACCGCTACTACACCGGGAGCCAGGCGCGTCATGCAGCGGTACACAGACAgAGTCGAATTCGTCGTATGTGGAACGACACGGTGCGAAAGCAGACAGAGTCGTCCTTCATGGCTGGAGACATCAACAGCACTCCCACTCTCAACCGTGGTACAATGGGAAACCATCTTCTAACCAATCCTGTGCTGCAAACCCGTACAGGAAGTTCACCTTACAACACGCTGCTGGCTGAAACGTTTACCCCTCCCTCGCCTGGAGTCTTCAACTCTACTGGAACTTTCCGTGACCCAAAGAGCACCCTGTCTAAAAACCGAGATCATGGAGGCATGGAGACGCTACCTCTAAATGGGAACTTCAACAACAGCTATTCTCTGCGTAGTGTTGGGGGTTCAGGAGCTCCCGGGGGAAGCTGTGACTTCCTGGGAGGTGGAGATAGCCCCCCTCCTGTGTTCAACCCCCGTGGTTCAGAAACTCTCGGCGGCATACGGAGAAACCTCTCTGACGCAGCAGCGTTCGAGAAGATGATCATATCGGAACTTGTGCACAATAATCTCCGAGGTGGTGGAGGGGCTGGGGGCGTTGACAGAACATGTGGCAGTCTGGTCAGAGGAATGGGGCGGGGCGGAGGCGGGGCAGAGCCAACGATAGGCATGGAGGACAACGACGACTTTCGTTCGCGAGAAGTGCGTCAGCGCACGCCGCAAGATGTGGAACTTCTTTACAAAGCTCTGGAGGAGCCCCTGCTCTTGCAGCGTGCCCAATCCGTGCTCTACCAGAGCGACCCAGACGAGTCCGAAAGCTACACGGCCGACCTGACCGAGAGTTTGGGCCACAGTGGTCACAGCGGCCAAAGCGCAACAGGCCAGGGCCAAAACGGAGGCCCCGATTCGCCTGCGCGGGACTCCCTCTATACCAGCATCACCAACCTGCGAGATTCGCCCTACCCCGACAGCAGCCCAGAGCCTCTGGAGGTGGTTCCGCGTTCAGCCCAGCCTCCGGAGGAGCTGTACTACAGCTCGGGTCGGCCTGCCATAGGCTCCCGCGGAGCACCTATGCAGACCTTCTACCAGGCTCCGCCTAGGAGACCGAGCACTGAAGCCCACCCCGCCCCTGAGCCCCCTCACAGCGAGGGAGATGGACAGATGCAGCTGGTCACAAGCCTGTGACCACGAGAAagaggtggaggaggaagagCGCCACAGGGTCTGATGCAAAGTGCCGCTGGCGATGATGGACTCCTCTCCTGTCTCTGACACCCTCCTTATGTCTGGTTGCCTTTTTgctctttcatttgttttgaagtAAGAGGTAAGGAAAGCCTAAACAGGGAGAGCGACAGAGAGGTTTGTCTCCATGGCAGCAGGCTCTCTGAAGTGCTGTGTAACCACTCTGCTCTCTCATCAGCATCATTTTCTCCTCCCTCCTGACGCACACACATAGAGAAAGAGCAAGTCCAACTATCTGCCTTTTCTCAGTGGACGTCTCTGCCTTCAGCTCTCTCTGCTCCAAAAATATCGTCAAACTTCACACCGGGTTtctatttctgtgttttatttcaagtcctatctttaaaatgttacttttgcgTAACTCCTTACCTTCGCTTTCCTTTCTCCATCATTATTTGATGAGAGCTGTTACGTGAGGAAATGGGGGTATGCCATTATACTGCAAGTGACAAAAAAATCTCTCTGAAAGCTCTTCAGTGTTGccaaaaataactgtttttgaGCCAGGACACAAACTGGAATctacacacacgcgcacacacacactcacagaagTGCTTGTTACTGAACATCAAGAGTGTGAACATATGCTcatgaaaaaggaaaacaagGACTATTGTTCAGACACAGGTAGCGGGAAGCTGCCTCAGTGGAGTTgcctttatttctttctctgaaCTGACTCTTCTGTATAGAACAACCGCAGAGACTGGGAACGAGGTGGGGGGCGTTAGGGCGCAACCCATCGTCAGCTGGGTCGTTTGAAGCCTATTGGCCATGGGACCTCTCGTGAATGAAACTCTGTAGGGTTTTGTCTCTGATCCACAGAAGGGGTTGGATTAAGGACTGAACCTGCTCTCCGAATCACTGATGGATGTTGTAGGTGGACGTGCTGTATCACCTGTGTTATTGTGGCTAGAAGAATTTTTTTGCTACCGTTCCAGCCATTCTTCAAGTCCGACCTCTGTACATATGAACCACACGAAAGCAAAAGCAAGTCTTACTCTACTCGTCTCCTGTACATAGAAgaacaaaagcaacaaaaaagtatcaaaatacTATGAAAAACAGTTGTACTGCAACGGAAATcgaaaataaagatgttttgaagttTGTGACCTAAACACCACgccactctctccctctctctttctttcgctCTCTCCGGCCCTCGTTCGGTCCTGCCCTGGAGCACCATGGTGCCAGGAAATCTAATTGTCTGCCaagagacagcgagagagagagacagaaagagaaggaTTTTACATACAAACGAGATAAATCCTGGCacaatttttatgtaatataaccCATTACATTGTTGGTAATGTTTGACCTTCAACATTCACAGACAGGAAGCGCTTGACGTGAATGGAAGGGCAATACACTGTGCCTCAGGGGCGCACTGGTGCATTGTGGGTTGATTGACAGCAGCCATAATGTAGTGTTGGTTATATTTTATCTGGAAGATGTAATAGATCAGACGACTAGATGAATAGAATATAAGATAtttaggtgaaaaaaaaaattggggggCACATTCGGAAACGTTTCAGTCGCAAACCCTAGATtgtatttgactgtttttacatACCAATATCAGCTGTTGTTTCTGAACCTGGTGTGACAGTTGATTTAcaatttgtatgtgtatgtctGAACGTGAACATTTGGATGCCTGTGAAACAAGAGTACGTATGTGAGCGAGTGTGTATCTCAGAGGCTATTTTTACTGGGTTAGATGGACCCGCATTAGAAGAACAGGAAGCAGAGtaaatctatatctatataagAGCTCAGTATAAGCTTCCATTTAAAAGACTTTGTTaaaggtattttaaatgttgtttttttgccagTCAGGTACAATGGAAACTGAGGttgagaacaaaaaaatttaaaatcaaaacaaaacaggttTAGCATTCATTGAGCAACAGGAACTTCTGACCAATGAGACACAGCCTCTGTGGTTTAGAATCCCcatatgcaaatgagctgcatAGCCTATTGAACAAAAGAGAGGTATGTCATGAGTGCTCCGCCCCTCTGAAGTCTGCTCAATCTTCAAGTCgttcatgtctttatttattaatatttatttgtcttttttgattatttatgcacatattcatttattcagtgtGGTTTCCATTCTGTGTACAAAGCATATGTAAGGGTGACGAGAGCATGCTATATTTTGAAAAGCATACTAGCATACTACTCTTGCTGCAGTATATACTATGTATCCTTTGCACAGCATGCAAATTTTATCTCAAATTAccaaatttttttgttttgttttgttccgttttttttttttttt

Function

symbol description
adgrl1 Predicted to enable G protein-coupled receptor activity; cell adhesion molecule binding activity; and latrotoxin receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling using intracellular calcium source; heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; and positive regulation of synapse maturation. Predicted to act upstream of or within positive regulation of synapse assembly. Predicted to be located in growth cone; plasma membrane; and synapse. Predicted to be active in several cellular components, including glutamatergic synapse; postsynaptic density; and presynaptic membrane. Predicted to be integral component of presynaptic membrane.

NR:

description
PREDICTED: adhesion G protein-coupled receptor L1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27045 False 937 TUCP 0.41 5 7934717 7940991
XM_043234653.1 True 6773 mRNA 0.51 21 7920404 7945973

Neighbor

gene id symbol gene type direction distance location
LOC122341277 NA coding downstream 26127 7890178 ~ 7894277 (-)
aatka aatka,LOC107711236,LOC107587956,LOC107670475,LOC107567236,LOC107757347 coding downstream 157080 7725703 ~ 7763324 (-)
sdk2a LOC107672436,LOC107744971 coding downstream 365956 7439251 ~ 7554448 (-)
cdc42ep4a cdc42ep4a,LOC107672486,LOC107711229,LOC107587960,LOC107744970,LOC107670511,LOC107599324 coding downstream 483687 7419126 ~ 7436717 (-)
pmp22a pmp22a,LOC107744969,LOC107711228,LOC107587961,LOC107670536,LOC107599349,LOC107672509 coding downstream 523102 7394724 ~ 7397302 (-)
LOC122331721 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 coding upstream 18686 7964659 ~ 7966218 (-)
LOC122331758 NA coding upstream 20835 7966808 ~ 7967871 (-)
LOC122331782 NA coding upstream 138396 8084369 ~ 8091624 (-)
irgf4 NA coding upstream 163084 8109057 ~ 8121029 (-)
LOC122334091 NA coding upstream 228063 8174036 ~ 8177995 (-)
LOC122331800 LOC107672496,LOC107711244 non-coding downstream 74359 7844349 ~ 7846045 (-)
G17967 LOC107757375,LOC107672496,LOC107670496,LOC107711245,LOC107711244,LOC107578720 non-coding downstream 76190 7843776 ~ 7844214 (-)
G17966 NA non-coding downstream 77439 7842150 ~ 7842965 (-)
G17964 NA non-coding downstream 99133 7820306 ~ 7821271 (-)
LOC122334432 NA non-coding downstream 112069 7805829 ~ 7808335 (-)
G18120 ighv4-5 non-coding upstream 4888 7950861 ~ 7951668 (-)
G18121 NA non-coding upstream 8509 7954482 ~ 7956724 (-)
G18159 NA non-coding upstream 43755 7989728 ~ 8088721 (-)
G18160 NA non-coding upstream 44542 7990515 ~ 8010008 (-)
LOC122331807 NA non-coding upstream 77638 8023611 ~ 8024579 (-)
LOC122331786 LOC107693569,LOC107722887,LOC107673775,LOC107563216,LOC107599327,LOC107572241,LOC107693566,LOC107661871,LOC107661873,LOC107599328 other downstream 6970 7896602 ~ 7913434 (-)
LOC122341856 LOC107711206,LOC107602719,LOC107661829,LOC107711209,LOC107711210,LOC107661830,LOC107599345,LOC107602722,LOC107728674 other downstream 1211023 6702503 ~ 6709381 (-)
crb3a crb3,crb3a,LOC107599343,LOC107602711 other downstream 1294873 6619217 ~ 6625531 (-)
LOC122341483 LOC107661847,LOC107711201,LOC107728682,LOC107670454,LOC107599341,LOC100536643,LOC107602685 other downstream 1306082 6607952 ~ 6614322 (-)
LOC122333927 LOC107599328,LOC107661850,LOC107602703,LOC107711190,LOC107599331,LOC107693566,LOC107722885,LOC107565605,LOC107673775,LOC107563216,LOC107599329,LOC107653436 other downstream 1496119 6394047 ~ 6424285 (-)
LOC122331739 NA other upstream 65003 8010976 ~ 8014701 (-)
fam234b srebf2,fam234b,LOC107690127,LOC107676178,LOC107572757,LOC107745393,LOC107576065,LOC107574637,LOC107721680,LOC107714892 other upstream 108066 8054039 ~ 8218088 (-)
LOC122334075 NA other upstream 112658 8058631 ~ 8171661 (-)
LOC122339740 NA other upstream 261725 8207698 ~ 8209093 (-)
LOC122342198 NA other upstream 272929 8218902 ~ 8219055 (-)

Expression


Co-expression Network