LOC122339740


Basic Information

Item Value
gene id LOC122339740
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8207698 ~ 8209093 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU27061
tccggtgtgtgtgtgtgtggttatgcttctataaatatatatagaacgcgcgcacacacacacacacacacacaaactctctcacacgcacacacacacgcgcgcgcgcgcagacactctctctctcactcacacacacacgcgcgcacgcacgcgcacacacacacactctcagagcGCGAGAGCTCGGTGATCATGGCGGCGGTGTCGGTGTCGGTTGTTCGCCGGTTCGTGTCTCTCTCGGTTCGGCTCGGGTCTCTGCAGCACCGGACCGCAGTGAGCACCACTTCCGGCGCCATTCTGCCCAAACCCAAGAAAGTGTCGTTCGGTCTGCTGAGGATCATGATGGTGGTCACCCCCTTCCTGTACGTCGGGACTCTCATCAGTAAGAACTTCGCTGCTCTGCTGGAGGAACACGACATCTTCGTCcctgaggatgatgatgatgacgactGATcccagACGCCGCTCAGTCTCTTCTCTTCTGAATCCTGGACTCTGTCTTCTATAATAAAGAATCTTTACTCCACTCAAAAGCTTCTTTTTTCAA
>TU27062
tccggtgtgtgtgtgtgtggttatgcttctataaatatatatagaacgcgcgcacacacacacacacacacacaaactctctcacacgcacacacacacgcgcgcgcgcgcagacactctctctctcactcacacacacacgcgcgcacgcacgcgcacacacacacactctcagagcGCGAGAGCTCGGTGATCATGGCGGCGGTGTCGGTGTCGGTTGTTCGCCGGTTCGTGTCTCTCTCGGTTCGGCTCGGGTCTCTGCAGCACCGGACCGCAGTGAGCACCACTTCCGGCGCCATTCTGCCCAAACCCAAGAAAGTGTACAGCGTTCGGTCTGCTGAGGATCATGATGGTGGTCACCCCCTTCCTGTACGTCGGGACTCTCATCAGTAAGAACTTCGCTGCTCTGCTGGAGGAACACGACATCTTCGTCcctgaggatgatgatgatgacgactGATcccagACGCCGCTCAGTCTCTTCTCTTCTGAATCCTGGACTCTGTCTTCTATAATAAAGAATCTTTACTCCACTCAAAAGCTTCTTTTTTCAA
>TU27063
tccggtgtgtgtgtgtgtggttatgcttctataaatatatatagaacgcgcgcacacacacacacacacacacaaactctctcacacgcacacacacacacacacactctcagagcGCGAGAGCTCGGTGATCATGGCGGCGGTGTCGGTGTCGGTTGTTCGCCGGTTCGTGTCTCTCTCGGTTCGGCTCGGGTCTCTGCAGCACCGGACCGCAGTGAGCACCACTTCCGGCGCCATTCTGCCCAAACCCAAGAAAGTGTATGATGGACTGGAGCTCTGCGCCGGTGTCAGGcccgttctgacggcacccatccgcaGCAGTGGGTGACCTGTGTGTGTCGTTGTGGTCAGACAGCGTTCGGTCTGCTGAGGATCATGATGGTGGTCACCCCCTTCCTGTACGTCGGGACTCTCATCAGTAAGAACTTCGCTGCTCTGCTGGAGGAACACGACATCTTCGTCcctgaggatgatgatgatgacgactGATcccagACGCCGCTCAGTCTCTTCTCTTCTGAATCCTGGACTCTGTCTTCTATAATAAAGAATCTTTACTCCACTCAAAAGCTTCTTTTTTCAA
>TU27064
tccggtgtgtgtgtgtgtggttatgcttctataaatatatatagaacgcgcgcacacacacacacacacacacaaactctctcacacgcacacacacacgcgcgcgcgcgcagacactctctctctcactcacacacacacgcgcgcacgcacgcgcacacacacacactctcagagcGCGAGAGCTCGGTGATCATGGCGGCGGTGTCGGTGTCGGTTGTTCGCCGGTTCGTGTCTCTCTCGGTTCGGCTCGGGTCTCTGCAGCACCGGACCGCAGTGAGCACCACTTCCGGCGCCATTCTGCCCAAACCCAAGAAAGTCGTTCGGTCTGCTGAGGATCATGATGGTGGTCACCCCCTTCCTGTACGTCGGGACTCTCATCAGTAAGAACTTCGCTGCTCTGCTGGAGGAACACGACATCTTCGTCcctgaggatgatgatgatgacgactGATcccagACGCCGCTCAGTCTCTTCTCTTCTGAATCCTGGACTCTGTCTTCTATAATAAAGAATCTTTACTCCACTCAAAAGCTTCTTTTTTCAACACTTACTCATCGAGGAggcattaaactgaaaaaagtgctggtatttaaaacattaagagaGAAAC
>XM_043233970.1
cacacacaaactctctcacacgcacacacacacgcgcgcgcgcgcagacactctctctctcactcacacacacacgcgcgcacgcacgcgcacacacacacactctcagagcGCGAGAGCTCGGTGATCATGGCGGCGGTGTCGGTGTCGGTTGTTCGCCGGTTCGTGTCTCTCTCGGTTCGGCTCGGGTCTCTGCAGCACCGGACCGCAGTGAGCACCACTTCCGGCGCCATTCTGCCCAAACCCAAGAAAGTGTCGTTCGGTCTGCTGAGGATCATGATGGTGGTCACCCCCTTCCTGTACGTCGGGACTCTCATCAGTAAGAACTTCGCTGCTCTGCTGGAGGAACACGACATCTTCGTCcctgaggatgatgatgatgacgactGATcccagACGCCGCTCAGTCTCTTCTCTTCTGAATCCTGGACTCTGTCTTCTATAATAAAGAATCTTTACTCCA

Function

GO:

id name namespace
GO:0072350 tricarboxylic acid metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko05012 Parkinson disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU27061 False 550 TUCP 0.48 3 8207764 8209093
TU27062 False 554 lncRNA 0.34 3 8207764 8209093
TU27063 False 583 lncRNA 0.54 4 8207764 8209093
TU27064 True 614 lncRNA 0.52 3 8207698 8209093
XM_043233970.1 False 463 mRNA 0.57 3 8207785 8209027

Neighbor

gene id symbol gene type direction distance location
LOC122334091 NA coding downstream 29703 8174036 ~ 8177995 (-)
irgf4 NA coding downstream 86669 8109057 ~ 8121029 (-)
LOC122331782 NA coding downstream 116074 8084369 ~ 8091624 (-)
LOC122331758 NA coding downstream 239827 7966808 ~ 7967871 (-)
LOC122331721 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 coding downstream 241480 7964659 ~ 7966218 (-)
LOC122331822 NA coding upstream 25806 8234899 ~ 8257213 (-)
LOC122341283 hebp1,LOC107670539,LOC107661078 coding upstream 92978 8302071 ~ 8305993 (-)
LOC122329328 hebp1,LOC107670539,LOC107661078 coding upstream 175971 8385064 ~ 8388690 (-)
LOC122331080 emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994 coding upstream 289639 8498732 ~ 8502673 (-)
zgc:65811 LOC107656948,LOC107698068,LOC107751600,LOC107575948,LOC107569882,LOC107732520,LOC107732523 coding upstream 304320 8513413 ~ 8524779 (-)
G18128 NA non-coding downstream 365 8206878 ~ 8207333 (-)
G18146 triobp,stap2,triobpb,LOC107574640,LOC107721687,LOC107661081 non-coding downstream 9611 8194376 ~ 8198087 (-)
G18142 NA non-coding downstream 25969 8179263 ~ 8181729 (-)
G18165 NA non-coding downstream 52106 8048971 ~ 8155592 (-)
G18159 NA non-coding downstream 118977 7989728 ~ 8088721 (-)
G18129 fam234b,LOC107714892,LOC107721680,LOC107576065 non-coding upstream 91321 8300414 ~ 8383611 (-)
G18155 NA non-coding upstream 97631 8306724 ~ 8389631 (-)
LOC122331391 NA non-coding upstream 105009 8314102 ~ 8317089 (-)
G18183 NA non-coding upstream 192537 8401630 ~ 8404572 (-)
LOC122333427 NA non-coding upstream 212109 8421202 ~ 8421632 (-)
LOC122334075 NA other downstream 36037 8058631 ~ 8171661 (-)
LOC122331739 NA other downstream 192997 8010976 ~ 8014701 (-)
LOC122341278 adgrl1,LOC107711219,LOC107599314,LOC107602690,LOC107661818,LOC107744976 other downstream 261725 7920404 ~ 7945973 (-)
LOC122331786 LOC107693569,LOC107722887,LOC107673775,LOC107563216,LOC107599327,LOC107572241,LOC107693566,LOC107661871,LOC107661873,LOC107599328 other downstream 294264 7896602 ~ 7913434 (-)
LOC122341856 LOC107711206,LOC107602719,LOC107661829,LOC107711209,LOC107711210,LOC107661830,LOC107599345,LOC107602722,LOC107728674 other downstream 1498317 6702503 ~ 6709381 (-)
LOC122342198 NA other upstream 9809 8218902 ~ 8219055 (-)
fmc1 NA other upstream 100439 8309532 ~ 8398828 (-)
zgc:113210 NA other upstream 783621 8992714 ~ 9007443 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other upstream 924950 9134043 ~ 9138089 (-)
G18433 LOC107670519,LOC107563315 other upstream 1217479 9426572 ~ 9462905 (-)

Expression


Co-expression Network