XLOC_006832 (ifi45)


Basic Information

Item Value
gene id XLOC_006832
gene name ifi45
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 37605896 ~ 37608441 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013141
CTATACGTCATCATTGCTAAGCCGTCAGCAAATGTCGGCATAATATTTGTACAGAGCAGAGGCAAAACACTTCGGTGGCTTTACAGTTGTGCAGCCTACGTTCTACGAGTCGCCGCCCACAGAACTATTTAAGCAAGCTGTCAGACACCTGAGCTCAGTGCAGAGCAAGATCATCCAGCATTTCTTCTCTTCAGTAGACTCGACCTCAGATGGCATTCACAGCTATTTTAGGAGCAGCTGGAGCAATTGCTGCAGCTCCTGCACTTCTAACAGCTGCAGGTTTCACTGGAGCTGGCATTGCTGCAGGATCAGTTGCCTCCTGGATGATGTCAACAACTGCCGTGGCGAGCGGAGGAGGAGTCGCTGCTGGATCAGCGGTTGCTGTTCTTCAAAGCGCAGGTGCAGCTGGAATCTCAATGGCAGGTCAAGCAGTTGTAGGTGCTGTGGGAGCTGCTATGGCCACTGCTGCCAGTATGGCCAGCAACTGTACTGGGTGACTGGAGAAACCTTGGCCAGTCTTTTTGTAGCATTTTACAAGGTTGCATTATGTTGATTCTCCAAATGCATGTTGTTCTTCCGATTGTATCTAGTATGGCTATTAAACCTTTATAAATCA
>TCONS_00013142
CTTCGGTGGCTTTACAGTTGTGCAGCCTACGTTCTACGAGTCGCCGCCCACAGAACTATTTAAGCAAGCTGTCAGACACCTGAGCTCAGTGCAGAGCAAGATCATCCAGCATTTCTTCTCTTCAGTAGACTCGACCTCAGATGGCATTCACAGCTATTTTAGGAGCAGGTAATTataaaacatgcatttatttgtaatattttagatttaacGTGTGTTACTTGACAtcaaaaatattgaaatgaaatgttgtagtgcaggcctgtagccagcctggtaaaagggctggttcttttttttttctcaaaaagtggaccttttagcaattatttgcctcattttctatttaattatgagatttaaattgtgacatgtaaagcatttttttttagctgtggtcatcataatcacactttttgatgaaccaaaaacatttcctatagatttaaaaaaagaaagattatGAAAAACCTATTCATTTATacatataaattttaaaatacaaatgtatcaCATCATCATTAGGGAAAAATGAATCTCTTAaggctttaaattaaaaactgcttattaagGCAAAGTAAGCACAATCAACTTTCCTGTCAGAATTTGGCcacttgaataataaaaaatttaacgtaataataataatgtagagcatCCTGATTTTTCTAGTCTCTTTTGTGAATAGTACATTTGAAAAATCATGCTTAACAACACTAGCCTaattagaattaaaattttattttataagctTTAAAATTTACTTTTGGTGCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000017489

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013141 False 616 mRNA 0.49 5 37605896 37608441
TCONS_00013142 True 774 lncRNA 0.32 3 37607057 37608372

Neighbor

gene id symbol gene type direction distance location
XLOC_006831 snapc1b coding downstream 5296 37586491 ~ 37600600 (-)
XLOC_006830 syt16 coding downstream 60409 37543498 ~ 37545487 (-)
XLOC_006829 NA coding downstream 70111 37528161 ~ 37535785 (-)
XLOC_006828 sgpp1 coding downstream 86079 37491804 ~ 37519817 (-)
XLOC_006827 wdr89 coding downstream 130907 37469093 ~ 37474989 (-)
XLOC_006833 si:dkey-188i13.6 coding upstream 1017 37609458 ~ 37615029 (-)
XLOC_006834 zgc:152791 coding upstream 9077 37617518 ~ 37620290 (-)
XLOC_006835 ifi46 coding upstream 14835 37623276 ~ 37631092 (-)
XLOC_006836 NA coding upstream 24185 37632626 ~ 37636598 (-)
XLOC_006837 si:dkey-188i13.9 coding upstream 30317 37638758 ~ 37642901 (-)
XLOC_006471 BX537274.2 misc downstream 27340991 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 36779671 825904 ~ 826225 (-)
XLOC_006819 AL845493.1 non-coding downstream 427180 37178602 ~ 37178716 (-)
XLOC_006817 NA non-coding downstream 495360 37110212 ~ 37110536 (-)
XLOC_006815 NA non-coding downstream 593660 37009812 ~ 37012236 (-)
XLOC_006814 NA non-coding downstream 608136 36995633 ~ 36997760 (-)
XLOC_006842 NA non-coding upstream 582080 38190521 ~ 38195214 (-)
XLOC_006843 NA non-coding upstream 1004784 38613225 ~ 38619719 (-)
XLOC_006846 BX323574.1 non-coding upstream 1244696 38853137 ~ 38853252 (-)
XLOC_006848 BX324188.2 non-coding upstream 1634114 39242555 ~ 39242672 (-)

Expression


Co-expression Network