LOC122331391


Basic Information

Item Value
gene id LOC122331391
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8314102 ~ 8317089 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU27161
cacacacacacacacacacacacacacacacacagatcatctCTATGAGTAATAAGTTTCATTTTTCTTCACGACTTGGAGTTATAcgaacaaaaacatcttaatttcagctttgtctttcagaaaaaaaaagttgtcggGGAGCAGAGACGCTATTCAGAAACCGTGATGCGTTCTGATGGTGTGCTGCTCCTCACACTGCTCTGGACCTTCACCGCTGTCTGTCAAGACTTCTATGATCAGGATTATTCTGACTATTGTAAGGGAATACTTTCTTCTCAGACTCTTGTGGTAGACGAAGTGCTTTGTGTTGGGAGTCAGTTTCCTTAAATGATGCTAATGCTGCAGAAGGGTTTTCTGTTGAATGACGGATGACGGTGTAAGCTGTGAAGATGTGACTGGATCTGTGGGGAAAGAAGTCTCTCTCACCTGCAGCATCTCTCTGCCGGATCTCTTCCACTGctgcattatgttttttaaataccacGAGGTCTACGCAGGCTCAGTGATCTGTAAGGATTGGTTTCCTCAGCACTCCTGTGAGCAGAGAAGCAGCTTCACGTGTAGATACACCCCGACTAGAGCGACTTCTTTCTGCAAACGTCATGTGGAGCCAGAAGTTCACAATTCACTGTGAACATAGAAGAGCCCTCGCGGATGGGTGACGCTGAGACTCCCAGCAAGACAGGACCAGTTCTCGTTGAGATCATCGTCTTCACTGGTGTGAGCTGCCtcgtcttcatcatcttcatcatcatcgttATCGTAGGTTGTTTGAAGTGCTTCAAAAAGCGCTCTGGATTACGGAGGAGAAGTGACGGAGGTGCTCGAGAAGAACAAACAGTCATGACCACTAATCTTTAGGACGAACACGGCCGGGTGATGCAAGTTTACTGAAACTGATGAACTGTAAAACCAGCCAATGTTTGGCTATGTAAAGATGATCTGATAATTCAGTCCTCGTTTGGTCCACTACTTCAGTGTATTACTACCACTAGTCTTTACTGGACTACTTCAAAGTATTATGCAATAATCATTTTGAGTATCATATAACATCTTGTCATGCATGCCTTTTTAAGCTCATgtcataattgtatttattcacaaATTTTATATGGAATTATTAGTGTTATGAGAagtctaaatatgacctgaaatCTCTTTTTATGATGGTTTTCCGAAGATGAAAGTCTGTTCTGGACTGAAGGAGGTATTATGTGTCTAGAAAGAGCACTTACAATGACTTACAAAGATACACAGCAACAATGTGTGTATTCATTCTAtagaaaaatgactttttgttctcttgtttctcatttttgtcTTGATGATATCCCATAATTTGTTTATGGGGTTCAGGTCTTCTGGCCAGTCGAGCACACCAACaccatggtcatttaaccaacttGGGCAGGAGCCAAACCCTGCTGgaaaaattaaatcagcatcttcaaaaagctggTCATCAGAaagaagcatgaagtgctccacAATTTCTTGTTAAATgggtttcaaaaaacacaatggccTCATTCTTAGTGGTCTCAGATTCTTGAATTGGTTTTGCTCGACAATCCTCATAAGGCTGCGGTTCTCTTGCTTGGTTGAGCATCTGGTTTCTGGTTGAGTTTCCTTCTgctcaactttctgttaacatgcttggatacagcactctgtgaacagacGGCTTCTTTGACAATGAATGTTGTGAAGGGTGTCAATATGTCACGGGGTGGTTTAgcaggaaggagcactcgacgagattaaataaacttaaacagttttaatcttcttcAAATCTTCTAGGCAGCCagacaggcagaacataaaccacacgtatAAACCTCGACGATacaaacacaggacttaaatacacaaggaaatcactaaattaactagacacaggtgaggacaatgacacaattaacacgAATAGAGGTAGGGAACACCGAGCACAcgacacaagacaaaaacaacaacaaaggatccaaagacgtgacacaaGGATTGAGAAGAatagtgaaccaaactgagagacctTTGCAGGTGTTGCAGTGATTAGCTGATTGGCATGTCACCGTGTTGTCATTTGTTGagattggtgggtttttgttacaTATGAGccaaaatcataattaaaaaaaagaattaaataac
>XR_006248180.1
TAACAGAGCCCTCGCGGATGGGTGACGCTGAGACTCCCAGCAAGACAGGACCAGTTCTCGTTGAGATCATCGTCTTCACTGGTGTGAGCTGCCtcgtcttcatcatcttcatcatcatcgttATCGTAGGTTGTTTGAAGTGCTTCAAAAAGCGCTCTGGATTACGGAGGAGAAGTGACGGAGGTGCTCGAGAAGAACAAACAGTCATGACCACTAATCTTTAGGACGAACACGGCCGGGTGATGCAAGTTTACTGAAACTGATGAACTGTAAAACCAGCCAATGTTTGGCTATGTAAAGATGATCTGATAATTCAGTCCTCGTTTGGTCCACTACTTCAGTGTATTACTACCACTAGTCTTTACTGGACTACTTCAAAGTATTATGCAATAATCATTTTGAGTATCATATAACATCTTGTCATGCATGCCTTTTTAAGCTCATgtcataattgtatttattcacaaATTTTATATGGAATTATTAGTGTTATGAGAagtctaaatatgacctgaaatCTCTTTTTATGATGGTTTTCCGAAGATGAAAGTCTGTTCTGGACTGAAGGAGGTATTATGTGTCTAGAAAGAGCACTTACAATGACTTACAAAGATACACAGCAACAATGTGTGTATTCATTCTAtagaaaaatgactttttgttctcttgtttctcatttttgtcTTGATGATATCCCATAATTTGTTTATGGGGTTCAGGTCTTCTGGCCAGTCGAGCACACCAACaccatggtcatttaaccaacttGGGCAGGAGCCAAACCCTGCTGgaaaaattaaatcagcatcttcaaaaagctggTCATCAGAaagaagcatgaagtgctccacAATTTCTTGTTAAATgggtttcaaaaaacacaatggccTCATTCTTAGTGGTCTCAGATTCTTGAATTGGTTTTGCTCGACAATCCTCATAAGGCTGCGGTTCTCTTGCTTGGTTGAGCATCTGGTTTCTGGTTGAGTTTCCTTCTgctcaactttctgttaacatgcttggatacagcactctgtgaacagacGGCTTCTTTGACAATGAATGTTGTGAAGGGTGTCAATATGTCACGGGGTGGTTTAgcaggaaggagcactcgacgagattaaataaacttaaacagttttaatcttcttcAAATCTTCTAGGCAGCCagacaggcagaacataaaccacacgtatAAACCTCGACGATacaaacacaggacttaaatacacaaggaaatcactaaattaactagacacaggtgaggacaatgacacaattaacacgAATAGAGGTAGGGAACACCGAGCACAcgacacaagacaaaaacaacaacaaaggatccaaagacgtgacacaaGGATTGAGAAGAatagtgaaccaaactgagagacctTTGCAGGTGTTGCAGTGATTAGCTGATTGGCATGTCACCGTGTTGTCATTTGTTGagattggtgggtttttgttacaTATGAGccaaaatcataattaaaaaaaagaattaaataa

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU27161 True 2157 lncRNA 0.39 4 8314102 8317089
XR_006248180.1 False 1516 lncRNA 0.40 2 8314103 8315934

Neighbor

gene id symbol gene type direction distance location
LOC122341283 hebp1,LOC107670539,LOC107661078 coding downstream 8109 8302071 ~ 8305993 (-)
LOC122331822 NA coding downstream 56889 8234899 ~ 8257213 (-)
LOC122334091 NA coding downstream 136107 8174036 ~ 8177995 (-)
irgf4 NA coding downstream 193073 8109057 ~ 8121029 (-)
LOC122331782 NA coding downstream 222478 8084369 ~ 8091624 (-)
LOC122329328 hebp1,LOC107670539,LOC107661078 coding upstream 67975 8385064 ~ 8388690 (-)
LOC122331080 emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994 coding upstream 181643 8498732 ~ 8502673 (-)
zgc:65811 LOC107656948,LOC107698068,LOC107751600,LOC107575948,LOC107569882,LOC107732520,LOC107732523 coding upstream 196324 8513413 ~ 8524779 (-)
LOC122341497 NA coding upstream 213737 8530826 ~ 8535042 (-)
pde6hb LOC107724721 coding upstream 218022 8535111 ~ 8537581 (-)
G18147 NA non-coding downstream 102803 8158064 ~ 8211299 (-)
G18128 NA non-coding downstream 106769 8206878 ~ 8207333 (-)
G18146 triobp,stap2,triobpb,LOC107574640,LOC107721687,LOC107661081 non-coding downstream 116015 8194376 ~ 8198087 (-)
G18142 NA non-coding downstream 132373 8179263 ~ 8181729 (-)
G18165 NA non-coding downstream 158510 8048971 ~ 8155592 (-)
G18183 NA non-coding upstream 84541 8401630 ~ 8404572 (-)
LOC122333427 NA non-coding upstream 104113 8421202 ~ 8421632 (-)
G18193 LOC107573033,LOC107758359,LOC107732521,LOC107569877 non-coding upstream 165558 8482647 ~ 8679157 (-)
G18196 NA non-coding upstream 178827 8495916 ~ 8497007 (-)
G18225 NA non-coding upstream 258222 8575311 ~ 8575731 (-)
LOC122342198 NA other downstream 95047 8218902 ~ 8219055 (-)
fam234b srebf2,fam234b,LOC107690127,LOC107676178,LOC107572757,LOC107745393,LOC107576065,LOC107574637,LOC107721680,LOC107714892 other downstream 96014 8054039 ~ 8218088 (-)
LOC122339740 NA other downstream 105009 8207698 ~ 8209093 (-)
LOC122334075 NA other downstream 142441 8058631 ~ 8171661 (-)
LOC122331739 NA other downstream 299401 8010976 ~ 8014701 (-)
zgc:113210 NA other upstream 675625 8992714 ~ 9007443 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other upstream 816954 9134043 ~ 9138089 (-)
G18433 LOC107670519,LOC107563315 other upstream 1109483 9426572 ~ 9462905 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other upstream 1676744 9993833 ~ 10210616 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other upstream 2077225 10394314 ~ 10396341 (-)

Expression


Co-expression Network