G16937


Basic Information

Item Value
gene id G16937
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6936142 ~ 6946151 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU18977
TAAAATTGATTTTTATTGTTTTTCTAAAACATTTGTAGATTATGTCCAGCATCTTCATGCTTGATTGTTAGACAAATCTCTTGTTTAAAACACAGTCAATTACCTAAATAATCTTTATAAAAGAATTTGTCAGTCATAGTTGATTATATCAAATCTACAACACCAACAATACAATGTTCAAAAAAAAGAACAAGAATTTAATATAAATCATAAGATTGATTAGATCTATTCATAAACATGGAATATTCATAGAATACAAATATTGCACCTCAGTGTGAGATATATAGTTGCTAACATAGCAGATTCAAGTAGCTTGAAGCATGATTTGCCAATGGCAAAATACAGTGAATTCCAAACATAGGAATACAAGCAATTATCCTCTCATGAAAGAGGTAGACCTAGAATAACATGTTCTCTTATAACAGAGTTAATTGTGGTAGTTCACATTGTTGTCTTTTAAAAACATAAGTACGGCTTCTACCAGGGTCTCCAGAGCGCCAGAGGTTCCTCTTTGCTCTTTGCGTCTGGTGAATGGAGCTGATGAGGCAGCAGCACACGTGTGTTGTTCTCTGTGGACGGCTGCATGTGCAGGAAGTGCTTCAGCAGTCTTCTGTGGGACTGAGTCTGCACTGGACACTGAGACAGGAAGTTGACGGCCTCCTGTACACATCTGGAGCGTCCGTCATGAGCTGCAGTAGAGCAGCCCGAGGGATTCTGGGAGCGTCTCAAGAAATCGAGCGTCATCTCCAGGATATCAGCTTTCTCCTGTCTGGAGTCGGGCTGTTGCTTTAGGAACTCTTGACCCAGAAGAGACTTGAGCTTCTCAATGCTGCTGTTGATCCGTTCTCTGCGGATCTTCTCCACTATTGGCTTTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU18977 True 876 lncRNA 0.40 2 6936142 6946151

Neighbor

gene id symbol gene type direction distance location
CI01000001_06921000_06929478 TAS1R1 coding upstream 5783 6921000 ~ 6930359 (+)
CI01000001_06893068_06917387 IFFO2A coding upstream 18734 6893068 ~ 6917660 (+)
CI01000001_06884020_06889266 UBR4 coding upstream 46150 6884020 ~ 6889992 (+)
CI01000001_06825263_06835397 EMC1 coding upstream 99679 6825263 ~ 6836463 (+)
CI01000001_06718133_06747744 KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 coding upstream 188398 6717159 ~ 6747744 (+)
CI01000001_06948672_06949034 NA coding downstream 2435 6948586 ~ 6949034 (+)
CI01000001_06956478_06959048 NA coding downstream 9348 6955499 ~ 6959620 (+)
CI01000001_06960133_06963752 ICMT coding downstream 13982 6960133 ~ 6964430 (+)
CI01000001_06981183_06981774 RPL22 coding downstream 35032 6981183 ~ 6981804 (+)
CI01000001_06996957_07040074 NA coding downstream 50806 6996957 ~ 7040081 (+)
G16317 NA non-coding upstream 135761 6800168 ~ 6800381 (+)
G16284 NA non-coding upstream 262631 6672182 ~ 6673511 (+)
G16257 NA non-coding upstream 420744 6515121 ~ 6515398 (+)
G16977 NA non-coding downstream 145602 7091753 ~ 7123993 (+)
G17019 NA non-coding downstream 205943 7152094 ~ 7152425 (+)
G16970 NA non-coding downstream 333092 7279243 ~ 7284904 (+)
G17057 NA non-coding downstream 370513 7316664 ~ 7319030 (+)
G17061 NA non-coding downstream 377135 7323286 ~ 7323615 (+)
G15995 NA other upstream 1221191 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1646186 5279837 ~ 5287698 (+)
G15794 NA other upstream 1871438 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 3314691 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 5265138 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 586421 7531541 ~ 7540586 (+)
G17234 NA other downstream 1085973 8032124 ~ 8032483 (+)
G17353 NA other downstream 2269871 9216022 ~ 9228859 (+)
G17354 NA other downstream 2288312 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 2472177 9435836 ~ 9436373 (+)

Expression


Co-expression Network