LOC122341292 (LOC107729471,LOC107687638)


Basic Information

Item Value
gene id LOC122341292
gene name LOC107729471,LOC107687638
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8980591 ~ 8988810 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU27283
TCATCCACTGCTGTCCTCATGATACGACATGTAACACTGCTGCTGGGTCTTGTGATGACGCTTTAGGATCTCAGCTCTGGTTCGAGAAGCTGCCCGTTAAAACAATCAGCAGCCAGGATGGGGCTGTTACACAAGTGACTTCGGTGCATTCAGATGTGCCCTGCAATGACACAGCGGCCTGTCCAGATGGAAGCACATGCTGTAAGACTAAAGAAGGAGGATGGGCCTGCTGTCCTCTGCCACAGGCTGTGTGTTGTGACGACTTCATCCACTGCTGTCCTCATGATACGACATGTAACACTGCTGCTGGGTCTTGTGATGACTCTTCAGGATCTCAGCTCTGGTTCGAGAAGCTGCCCGTCAAAACAATCAGCAGTCAGGTTGGGGCTGTTACACAAGTGACTTCGGTGCATTCAGATGTCCCCTGTAATGACACAGCAGCCTGTCCAGATGGAAGCACATGCTGTAAGACTAAAGAAGGAGAATGGGCCTGCTGTCCTCTGCCACAGGCTGTGTGTTGTGACGACTTCATCCACTGCTGTCCTCATGATACGACATGTAACACTGCTGCTGGGTCTTGTGATG
>XM_043234662.1
AGGCGGAGCTTGACAGAACTCATTTAATGGGCAAACGTTTATTAATTCAAGCACAGTGTGGAAACGTTGCGAGGGGACAAGATCGGTAACTTGGAACTCACGGATCCACGGACTGGTCATTCACCTTCAGCCGTTTACAAATCCACCTGttcattcaattaaatATGTTGAAAGTGACATTAGGCCTCGCTCTGGTGACTCTGGTTGCTTGCTCGCAGTGCCCCAACAATGAAGTGTGTGAGGCAGGCCAGACATGCTGCCAGGATCCCACCGGAGAATTCAGCtgctgccctttccataacggagaGTGCTGTGAGGACCACCTGCACTGCTGTCCTGAATACATGCTGTGCAGTGTTACAGACTCCATATGTGAAAACGCTACACTTGCAATGCCGTTTGTGAAGAGGATACCAGCTAAACAGACAGACCATCCCAAATCGTTCAGAATGATTCCCTCATTACCGGCGAGTGAGAATGATATCACCTGTCCTGATGGCTCCTTCTGTCCTGCTGAGTTCTCCTGTCTGCTGATGGCTTCATCATATGGGTGCTGTCCTGTAGCACAGGGTCTTGTGTGCTCAGATGGGAAACACTGCTGCCCAAAAGACCATGAATGCAGTGCAGACAGCAAGTCCTGTGTCAAACTAAAAGAACCAGTCAAGACTGTTCTTTGTGGAAATGGGATCTCAGAGTGTCCCGTGGACACCACATGTTGTGAGGCAGAAGATGGTCAGTGGGCATGCTGTCCAGTGCCAAAGGCTGTATGTTGTGATGATAAAATCCACTGTTGTCCAGAGGACAGTGTCTGTGATGTTGAAGCCTCCAAGTGCATGTCCTCCACCAATCAGGAGCTGCCTATGTGGGACAAGTTCCCTGCTCGTCTTAGAGCTGAATGGGAAGATCACAAACCTGCAGAAATGGGAGCTGAAGCTGAACTCACTACAACCAGACAAATCACTACTGCTGGCAACCAAATGACTAGCCTGCCTGGTGTACTACCAAAGACCTCTGACGTTCCCTGCAATGACACAGCGGCCTGTCCAGATGGAAGCACATGCTGTAAGACTAAAGAGGGAGAATGGGCCTGCTGTCCTCTGCCACAGGCTGTGTGCTGTGACGACTTCATCCACTGCTGTCCTCATGATACGACATGTAACACTGCTGCTGGGTCTTGTGATGACGCTTTAGGATCTCAGCTCTGGTTCGAGAAGCTGCCCGTTAAAACAATCAGCAGCCAGGATGGGGCTGTTACACAAGTGACTTCGGTGCATTCAGATGTGCCCTGCAATGACACAGCGGCCTGTCCAGATGGAAGCACATGCTGTAAGACTAAAGAAGGAGGATGGGCCTGCTGTCCTCTGCCACAGGCTGTGTGTTGTGACGACTTCATCCACTGCTGTCCTCATGATACGACATGTAACACTGCTGCTGGGTCTTGTGATGACTCTTCAGGATCTCAGCTCTGGTTCGAGAAGCTGCCCGTCAAAACAATCAGCAGTCAGGTTGGGGCTGTTACACAAGTGACTTCGGTGCATTCAGATGTCCCCTGTAATGACACAGCAGCCTGTCCAGATGGAAGCACATGCTGTAAGACTAAAGAAGGAGAATGGGCCTGCTGTCCTCTGCCACAGGCTGTGTGTTGTGACGACTTCATCCACTGCTGTCCTCATGATACGACATGTAACACTGCTGCTGGGTCTTGGTACCTCTAA

Function

NR:

description
PREDICTED: granulins-like isoform X5

GO:

id name namespace
GO:0001889 liver development biological_process
GO:0048675 axon extension biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27283 False 585 lncRNA 0.53 5 8987053 8988610
XM_043234662.1 True 1715 mRNA 0.50 17 8980591 8988810

Neighbor

gene id symbol gene type direction distance location
LOC122333359 hs3st4,LOC107703335,LOC107568293,LOC107741793,LOC106601107,LOC105013403,LOC106607349 coding upstream 715 8976324 ~ 8979876 (+)
LOC122342001 cpt1cb,LOC107747872,LOC107667163,LOC100333227,LOC107730771,LOC107689673 coding upstream 125826 8835129 ~ 8854765 (+)
LOC122330982 emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994 coding upstream 272309 8704444 ~ 8708282 (+)
LOC122341890 grin2bb,LOC107725336,LOC107573036,LOC107698059,LOC108425688,LOC107758357,LOC107661082,LOC107676879 coding upstream 320075 8616280 ~ 8660516 (+)
ddx47 ddx47,LOC106601200 coding upstream 404878 8565400 ~ 8575713 (+)
colgalt1a colgalt1,LOC107672476,LOC107757371,LOC107711180,LOC107670492,LOC107567242,LOC108429625,LOC108257422 coding downstream 24285 9013095 ~ 9021646 (+)
LOC122341294 gmip,LOC107672475,LOC107670530,LOC107587992,LOC107711163,LOC107757342 coding downstream 35568 9024378 ~ 9041533 (+)
lmx1al lmx1al,LOC107672514,LOC107670451,LOC108429662,LOC108256788,LOC107567229 coding downstream 54628 9043438 ~ 9064147 (+)
atp13a1 atp13a1,LOC107711248,LOC107672485,LOC107757369,LOC107670516 coding downstream 78836 9067646 ~ 9083475 (+)
LOC122332643 LOC107670450,LOC107672442,LOC107711182,LOC107757351,LOC107567228 coding downstream 95554 9084364 ~ 9089675 (+)
G18261 hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621 non-coding upstream 98469 8881198 ~ 8882122 (+)
G18092 NA non-coding upstream 304705 8671661 ~ 8675886 (+)
G18055 NA non-coding upstream 490174 8474293 ~ 8490417 (+)
LOC122331402 NA non-coding upstream 666101 8312389 ~ 8314490 (+)
G18010 NA non-coding upstream 763374 8215252 ~ 8217217 (+)
G18303 NA non-coding downstream 261289 9250099 ~ 9250630 (+)
G18305 NA non-coding downstream 273160 9261970 ~ 9262239 (+)
G18425 LOC105357980 non-coding downstream 424834 9413644 ~ 9414007 (+)
G18429 NA non-coding downstream 495625 9484435 ~ 9484736 (+)
G18443 NA non-coding downstream 552890 9541700 ~ 9543366 (+)
G18048 NA other upstream 238289 8513349 ~ 8742302 (+)
LOC122342110 wbp11,LOC107751605,LOC107678993 other upstream 417212 8260084 ~ 8563379 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other upstream 429440 8544291 ~ 8551151 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other upstream 827697 8150743 ~ 8152894 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other upstream 920734 8056659 ~ 8059857 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other downstream 21240 9010050 ~ 9012178 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other downstream 149657 9138467 ~ 9183290 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other downstream 195589 9184399 ~ 9185660 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other downstream 704139 9692949 ~ 9697915 (+)
G18491 NA other downstream 750986 9739796 ~ 9749880 (+)

Expression


Co-expression Network