pgls (pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497)


Basic Information

Item Value
gene id pgls
gene name pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9010050 ~ 9012178 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU27303
GATGCGTAGTGTTTGTGTCAACTTGGGGCAGCAAAGCTCCTGTGCTCAAGCAAGTGTTGGAGGGTGGAGACGGCCCTGCCCTTCCAGCAGCTCTGGTCTCACCCGGACAGGAGAGCTCTTCTGGCTGGTGGATGAGCCTGCAGCTGCCTCCCTCACGCCTCAGGTGGAGAGGCCAGGTCCTGGAGCAAAGCTTTGAATTCAGGAGACAGAACTGTCTAGTATTCTTATGGAGCACCTAAAAAGCCCTGTGTTTACCCAGACCCAGGATAACATGAATGTAATTACTGCAATTatcatttatactgtaaaacTGTTATGGGATCCGTGAAACTGTCAGAACTGGTTTACTGATACTACATTAAACAATAAAGTagtaaaacaaatgcataccTTTTT
>XM_043225635.1
GTTGGTTAGATCGCGTGAGGGGCACGTATAGGAAATCTCACTATTAAGAAAACATTCATTGagAATTATGTCTGGACGAAGAGTGGTGGTTTTCCCCTCAGTGACCGAGCTTGGATGCTCTCTGGCCCAGCTGGTGTTCTCACGAGCAGAAAAAGCTCTCAGCACAGGTGCAAGCTTCTCTCTGGGCCTTTCAGGAGGTTTGGTGTCCATTCTGAGTAAGGAGCTGCCCGCTGTCCCAGACCTGGACTGCAGCAAATGGCTCATTGGATTCTGCGACGAGAGACTCGTTCCATTCAGTGATCCTGAAAGCACATATGGGAACAACatgttaaaaAATCAGTTGTTTGGGAAAATCAGCATTCCGGAAGAAAGGATTTTGGCTATAGATCCTGCGTTACCCGTGCAAGAATGTGCAGATGACTATGCTGGCAAACTGAGCAAGGCTTTTAACACAGAGCAAATTCCAATTTTTGACATGCTGTTGCTGGGAATGGGATCAGATGGACACACCTGCTCTCTCTTTCCAGATCATCCTTTATTGCAGgaAAGCCAGAGGACAGTGGCACCCATCTCTGATCCCAAACCACCGCCTCAACGTGTCACATGACGTTACCCACAGTTAACTCCTGCTCGATGCGTAGTGTTTGTGTCAACTTGGGGCAGCAAAGCTCCTGTGCTCAAGCAAGTGTTGGAGGGTGGAGACGGCCCTGCCCTTCCAGCAGCTCTGGTCTCACCCGCAGGAGAGCTCTTCTGGCTGGTGGATGAGCCTGCAGCTGCCTCCCTCACGCCTCAGGTGGAGAGGCCAGGTCCTGGAGCAAAGCTTTGAATTCAGGAGACAGAACTGTCTAGTATTCTTATGGAGCACCTAAAAAGCCCTGTGTTTACCCAGACCCAGGATAACATGAATGTAATTACTGCAATTatcatttatactgtaaaacTGTTATGGGATCCGTGAAACTG

Function

symbol description
pgls Predicted to enable 6-phosphogluconolactonase activity. Predicted to be involved in pentose-phosphate shunt, oxidative branch. Predicted to act upstream of or within carbohydrate metabolic process and pentose-phosphate shunt. Predicted to be active in cytoplasm. Orthologous to human PGLS (6-phosphogluconolactonase).

NR:

description
6-phosphogluconolactonase isoform X1

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0017057 6-phosphogluconolactonase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27303 False 396 lncRNA 0.25 2 9011693 9012178
XM_043225635.1 True 963 mRNA 0.49 13 9010050 9012115

Neighbor

gene id symbol gene type direction distance location
LOC122333359 hs3st4,LOC107703335,LOC107568293,LOC107741793,LOC106601107,LOC105013403,LOC106607349 coding upstream 30174 8976324 ~ 8979876 (+)
LOC122342001 cpt1cb,LOC107747872,LOC107667163,LOC100333227,LOC107730771,LOC107689673 coding upstream 155285 8835129 ~ 8854765 (+)
LOC122330982 emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994 coding upstream 301768 8704444 ~ 8708282 (+)
LOC122341890 grin2bb,LOC107725336,LOC107573036,LOC107698059,LOC108425688,LOC107758357,LOC107661082,LOC107676879 coding upstream 349534 8616280 ~ 8660516 (+)
ddx47 ddx47,LOC106601200 coding upstream 434337 8565400 ~ 8575713 (+)
colgalt1a colgalt1,LOC107672476,LOC107757371,LOC107711180,LOC107670492,LOC107567242,LOC108429625,LOC108257422 coding downstream 917 9013095 ~ 9021646 (+)
LOC122341294 gmip,LOC107672475,LOC107670530,LOC107587992,LOC107711163,LOC107757342 coding downstream 12200 9024378 ~ 9041533 (+)
lmx1al lmx1al,LOC107672514,LOC107670451,LOC108429662,LOC108256788,LOC107567229 coding downstream 31260 9043438 ~ 9064147 (+)
atp13a1 atp13a1,LOC107711248,LOC107672485,LOC107757369,LOC107670516 coding downstream 55468 9067646 ~ 9083475 (+)
LOC122332643 LOC107670450,LOC107672442,LOC107711182,LOC107757351,LOC107567228 coding downstream 72186 9084364 ~ 9089675 (+)
G18261 hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621 non-coding upstream 127928 8881198 ~ 8882122 (+)
G18092 NA non-coding upstream 334164 8671661 ~ 8675886 (+)
G18055 NA non-coding upstream 519633 8474293 ~ 8490417 (+)
LOC122331402 NA non-coding upstream 695560 8312389 ~ 8314490 (+)
G18025 fam234b,LOC107576065 non-coding upstream 793019 8216524 ~ 8217031 (+)
G18303 NA non-coding downstream 237921 9250099 ~ 9250630 (+)
G18305 NA non-coding downstream 249792 9261970 ~ 9262239 (+)
G18425 LOC105357980 non-coding downstream 401466 9413644 ~ 9414007 (+)
G18429 NA non-coding downstream 472257 9484435 ~ 9484736 (+)
G18443 NA non-coding downstream 529522 9541700 ~ 9543366 (+)
LOC122341292 LOC107729471,LOC107687638 other upstream 21240 8980591 ~ 8988810 (+)
G18048 NA other upstream 267748 8513349 ~ 8742302 (+)
LOC122342110 wbp11,LOC107751605,LOC107678993 other upstream 446671 8260084 ~ 8563379 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other upstream 458899 8544291 ~ 8551151 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other upstream 857156 8150743 ~ 8152894 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other downstream 126289 9138467 ~ 9183290 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other downstream 172221 9184399 ~ 9185660 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other downstream 680771 9692949 ~ 9697915 (+)
G18491 NA other downstream 727618 9739796 ~ 9749880 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other downstream 786637 9798815 ~ 9799796 (+)

Expression


Co-expression Network