G18458 (LOC107672431,LOC107711167,LOC107587937)


Basic Information

Item Value
gene id G18458
gene name LOC107672431,LOC107711167,LOC107587937
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9574881 ~ 9575902 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU27567
CGTTGCATTAAACACCAAACCCTCGAGCCTCCGTTGCTCCAAAGCCTGATCCTTTTTCTGGATGATCTCATTCAGCAGTTGAGCGTAGAGTTGGGTGATGCGGGCGTTCATGTTGACGCTCTCCCTTCGCAGAACTCGCATCTCATTGGCCAGCGCGCCCTCCTGCTCCAGCTGCCCACGCATTGTGTCCAGCTGTTCCTGCTGGCGGTCCAGCAGCGCGCGCAGGGACGCCATCTCAGAGCGGTTGACACGAGCCGTCTCGGTGCTCACGCAAAGCGCCCCCGTTAACTTCTGCTGAGGTACGATGAAAGTGTAGGAACAGCGGCTCGGCTTGTTCTCTGTCGCTCGAGATGGCCTTTTCTGACCCGCATCACCCTTGGAGGTGTCTAAACCGCAGCCCCCATCAAAAACCAGCAGGAAGACCAAGGCACAAGTCACTGGAATTTCCATAAGT
>TU27568
CGTTGCATTAAACACCAAACCCTCGAGCCTCCGTTGCTCCAAAGCCTGATCCTTTTTCTGGATGATCTCATTCAGCAGTTGAGCGTAGAGTTGGGTGATGCGGGCGTTCATGTTGACGCTCTCCCTTCGCAGAACTCGCATCTCATTGGCCAGCGCGCCCTCCTGCTCCAGCTGCCCACGCATTGTGTCCAGCTGTTCCTGCTGGCGGTCCAGCAGCGCGCGCAGGGACGCCATCTCAGAGCGGTTGACACGAGCCGTCTCGGTGCTCACGCAAAGCGCCCCCGTTAACTTCTGCTGAGGTACGATGAAAGTGTAGGAACAGCGGCTCGGCTTGTTCTCTGTCGCTCGAGATGGCCTTTTCTGACCCGCATCACCCTTGGAGGTGTCTAAACCGCAGCCCCCATCAAAAACCAGCAGGAAGACCAAGGCACAAGTCACTGGAATTTCCATAAGTGTTGCAACTGAGccataagaaacaaaaaaatgcaaaatcttAGCATTTTACAGACTGCACGCAGACTGCGTGTGAATTAGCCACCAACTGGCATTAGATTGTGTTGTTCAGACTTGAACTGACTTGAAAAAGAAGTTAAAAAGTACTAAACCACTGTGACCACAAAATTTCGAAATTGGGATTTTTCATCGTCTTATTGCGAAAACCT
>TU27569
ttaaaatgtttaacttcAACAGCTTCATTATTACAAATGTGTGTTTACAAATATACTGATTTTTACAAATgccattaacatatttttacttCACATGCTTGTCCGAAAACATGTGCTTAAGTGGGTcaacaaaaaagctaaaattgCTTCACTTAAGTGTATATACTAAAGCATGCTAAAATGCACTGTTTAGTCTTgctttttttagattatattaaaatgtagggctttttatttcacatttggGTAAATCTGTGCACAGTCATTCTGAGACTCTCCCATCTCACTTGCATCTAGGAGAAACAACTGaggtaataataatgtttctttacaGTAGGGAATGATTTGAGCTACCTGGGCCGTTGCATTAAACACCAAACCCTCGAGCCTCCGTTGCTCCAAAGCCTGATCCTTTTTCTGGATGATCTCATTCAGCAGTTGAGCGTAGAGTTGGGTGATGCGGGCGTTCATGTTGACGCTCTCCCTTCGCAGAACTCGCATCTCATTGGCCAGCGCGCCCTCCTGCTCCAGCTGCCCACGCATTGTGTCCAGCTGTTCCTGCTGGCGGTCCAGCAGCGCGCGCAGGGACGCCATCTCAGAGCGGTTGACACGAGCCGTCTCGGTGCTCACGCAAAGCGCCCCCGTTAACTTCTGCTGAGGTACGATGAAAGTGTAGGAACAGCGGCTCGGCTTGTTCTCTGTCGCTCGAGATGGCCTTTTCTGACCCGCATCACCCTTGGAGGTGTCTAAACCGCAGCCCCCATCAAAAACCAGCAGGAAGACCAAGGCACAAGTCACTGGAATTTCCATAAGTGTTGCAACTGAGccataagaaacaaaaaaatgcaaaatcttAGCATTTTACAGACTGCACGCAGACTGCGTGTGAATTAGCCACCAACTGGCATTAGATTGTGTTGTTCAGACTTGAACTGACTTGAAAAAGAAGTTAAAAAGTACTAAACCACTGTGACCACAAAATTTCGAAATTGGGATTTTTCATCGTCTTATTGCGAAAACCT

Function

NR:

description
PREDICTED: hemicentin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27567 False 454 lncRNA 0.57 1 9575241 9575694
TU27568 False 662 lncRNA 0.51 1 9575241 9575902
TU27569 True 1022 lncRNA 0.38 1 9574881 9575902

Neighbor

gene id symbol gene type direction distance location
olfm2a olfm2a,olfm2,LOC107563315,LOC107670519 coding upstream 87693 9428864 ~ 9487188 (+)
col5a3a col5a3a,LOC107672483,LOC107711265,LOC107563316,LOC107757338,LOC107670510,LOC107587984 coding upstream 174071 9353698 ~ 9400810 (+)
zmp:0000001048 zmp:0000001048,LOC107711259,LOC107670472,LOC107563320 coding upstream 307151 9260905 ~ 9267730 (+)
camsap3 LOC107711256,LOC107672468,LOC107587945,LOC107670479,LOC107757361 coding upstream 329224 9214244 ~ 9245657 (+)
xab2 xab2,LOC107672506,LOC107670481 coding upstream 361947 9206654 ~ 9212934 (+)
ppan ppan,LOC107672501,LOC107711268,LOC107670430,LOC107754053 coding downstream 1823 9577725 ~ 9582385 (+)
p2ry11 p2ry11,LOC107711269,LOC107672502,LOC107670465,LOC107754043 coding downstream 6472 9582374 ~ 9586218 (+)
eif3g eif3g,LOC107672439,LOC107711270,LOC107754044,LOC107670490 coding downstream 12108 9588010 ~ 9591291 (+)
icam3 NA coding downstream 80650 9656552 ~ 9666605 (+)
LOC122341977 NA coding downstream 91665 9667567 ~ 9672804 (+)
G18457 NA non-coding upstream 392 9574289 ~ 9574489 (+)
G18456 LOC107672431,LOC107587937 non-coding upstream 619 9573184 ~ 9574262 (+)
G18454 LOC107711167 non-coding upstream 3147 9571154 ~ 9571734 (+)
G18453 NA non-coding upstream 4598 9570038 ~ 9570283 (+)
G18443 NA non-coding upstream 31515 9541700 ~ 9543366 (+)
G18470 dnmt1,LOC107670489 non-coding downstream 26740 9602642 ~ 9603064 (+)
G18502 ba1,ba2 non-coding downstream 199418 9775320 ~ 9784458 (+)
G18507 NA non-coding downstream 278701 9854603 ~ 9859173 (+)
G18517 NA non-coding downstream 289884 9865786 ~ 9943153 (+)
G18549 prkcsh,LOC107703311,LOC107725022,LOC107754018,LOC107587972 non-coding downstream 335055 9910957 ~ 9911612 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other upstream 389221 9184399 ~ 9185660 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other upstream 391591 9138467 ~ 9183290 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other upstream 562703 9010050 ~ 9012178 (+)
LOC122341292 LOC107729471,LOC107687638 other upstream 586071 8980591 ~ 8988810 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other upstream 1023730 8544291 ~ 8551151 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other downstream 117047 9692949 ~ 9697915 (+)
G18491 NA other downstream 163894 9739796 ~ 9749880 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other downstream 222913 9798815 ~ 9799796 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other downstream 449916 10025818 ~ 10103461 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other downstream 1115988 10691890 ~ 10698540 (+)

Expression


Co-expression Network