G18549 (prkcsh,LOC107703311,LOC107725022,LOC107754018,LOC107587972)


Basic Information

Item Value
gene id G18549
gene name prkcsh,LOC107703311,LOC107725022,LOC107754018,LOC107587972
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9910957 ~ 9911612 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU27691
CCATGCGTCGACGGGCGGAGAGCGTGGAGTCTAGAGCTCCGGGTGCACGTGTGGCGAGGGGTCAGCGCCGGCCGGCTCTTGGCACACCGCAGGAGTGGTGAATTCCATCAGGTATTCACAGCGACTCGGCTCCGATGTCGAGGTCACCACAGTCTCCTTCCCACAAGTCAGCTTCACCTATGTAGTTGATCTGTTTGGACCTTGCCAGCACCCGGTGCCGTGCTCGTATTTCATCACCAAGTACTTATTATTTTCAGGCCCTGACCAGCTTCCCCACGTCCTGGGAACACGAGCATCTCTCATTAAATACGCTCAAAAATGTGATGACGAAGTGATATTGAAGAAGAAAGAGGCGTTTTAATGTGGTTTGTTGGTCTTAAAGAGGTTTAAGCTGTTAAGACCAGGTGTTTAGTTGAACGCTATGGATGCtccataataaaataaaaaaagaatgtgatATCACTACATAGCCAATATTAAAAGCTCTATAATgtctaaacaaacatttttatcctTTACTTCTATTTTCTGATATTAACGTGCCTGTGAGTCAGAGACTGTAAATTACAGTGATCCCG

Function

symbol description
prkcsh Predicted to enable calcium ion binding activity and kinase activity. Acts upstream of or within liver development and pronephros development. Predicted to be located in endoplasmic reticulum. Predicted to be part of glucosidase II complex. Used to study polycystic liver disease. Human ortholog(s) of this gene implicated in liver disease and polycystic liver disease. Orthologous to human PRKCSH (protein kinase C substrate 80K-H).

NR:

description
PREDICTED: glucosidase 2 subunit beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27691 True 578 lncRNA 0.46 2 9910957 9911612

Neighbor

gene id symbol gene type direction distance location
elavl3 elavl3,LOC107754020,LOC107674672,LOC107703356,LOC106607222,LOC102780136 coding upstream 2382 9892533 ~ 9908575 (+)
angptl8 NA coding upstream 47739 9860463 ~ 9863218 (+)
LOC122332778 NA coding upstream 106571 9803573 ~ 9804386 (+)
LOC122331228 LOC107596828,LOC107596825,LOC107703325,LOC107587921,LOC107674643 coding upstream 114425 9795789 ~ 9796532 (+)
hbbe1.2 LOC107703325,LOC107587921,LOC107596828,LOC107596825 coding upstream 117568 9792656 ~ 9793389 (+)
nat15 nat15,naa60,LOC107690248,LOC107568044,LOC107685925,LOC107738623 coding downstream 8963 9920575 ~ 9927011 (+)
carhsp1 carhsp1,LOC107576530,LOC107733846,LOC107690249,LOC107590589,LOC107738622 coding downstream 15500 9927112 ~ 9941228 (+)
LOC122341833 tmem114,LOC107738619,LOC107685939,LOC107733824,LOC107690318,LOC107568650 coding downstream 63760 9975372 ~ 9982638 (+)
sept12 sept12,LOC107690244,LOC107568113,LOC107738615,LOC107685931,LOC107733855 coding downstream 330898 10242510 ~ 10296401 (+)
flr flr,LOC107568145,LOC107733869,LOC107738612,LOC107568167,LOC107680859 coding downstream 462490 10374102 ~ 10385643 (+)
G18507 NA non-coding upstream 51784 9854603 ~ 9859173 (+)
G18502 ba1,ba2 non-coding upstream 126499 9775320 ~ 9784458 (+)
G18470 dnmt1,LOC107670489 non-coding upstream 307893 9602642 ~ 9603064 (+)
G18458 LOC107672431,LOC107711167,LOC107587937 non-coding upstream 335055 9574881 ~ 9575902 (+)
G18457 NA non-coding upstream 336468 9574289 ~ 9574489 (+)
G18671 NA non-coding downstream 362362 10273974 ~ 10302050 (+)
G18744 NA non-coding downstream 660207 10571819 ~ 10579144 (+)
G18747 NA non-coding downstream 677910 10589522 ~ 10589819 (+)
G18757 NA non-coding downstream 727477 10639089 ~ 10639293 (+)
G18763 NA non-coding downstream 751634 10663246 ~ 10664532 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other upstream 111161 9798815 ~ 9799796 (+)
G18491 NA other upstream 161077 9739796 ~ 9749880 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other upstream 213042 9692949 ~ 9697915 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other upstream 725297 9184399 ~ 9185660 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other upstream 727667 9138467 ~ 9183290 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other downstream 114206 10025818 ~ 10103461 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other downstream 780278 10691890 ~ 10698540 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other downstream 841147 10752759 ~ 10842507 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other downstream 1422129 11333741 ~ 11335825 (+)
G18949 NA other downstream 1457281 11368893 ~ 11369752 (+)

Expression


Co-expression Network