G18574 (LOC107568067,LOC107690317,LOC107733849)


Basic Information

Item Value
gene id G18574
gene name LOC107568067,LOC107690317,LOC107733849
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10025818 ~ 10103461 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU27725
CACAGATCTTCCCCAAACTTCAAGTACCGTCTGACAAGCAGGAGAACAGTGTGTTAACACACACCTCGGACCCTGGCTATACTTGCGCTGGCCTGGCCACTGTCTGCTGCATGCCAAAAAAGcaatagagagaaaaagagagaacagGTACTTACGCCAAACATTTGCCTGAGGTCTGGATCTCTGAACCTGAAGGGGATGTTGGAGACGTGGAGCCTCTTGGGCTgcgttttgttttctgtgttttcagatgACTGTGTTTGCTGTTGGCTGTCTGTCTGTGCTGAATCGTCTGTCTGTGGCTGTGCCGGAGACCGCCTGTACGCTGTTGTCTGGTCCGCTGGGCTCACTGTGCGTCTGGGCAGGGGGGTACATGTTCAGCGTGTGCTCTGCCACGGGGGTCTGGCCCGGGTAGTCTGGAGTCGGGTGAGGGTGGGACGGCGTGTACTCAGCAGGAATGCCGTTCTGAGGGGGAGCGAACTGGGCCGATGGGTAAGGCTGGGCCATGGTTTCTGGGGGTGCTGGGGCGTCTTGATTACCCTGAAAGACAGAGAACCACAGCATAAGCGTTAACAGCAAATTCGAATAA
>TU27728
CTCAGATACAGAGCGAGAGCGAGATGGGGGCTTACTGTGGCTGTGCCGGAGACCGCCTGTACGCTGTTGTCTGGTCCGCTGGGCTCACTGTGCGTCTGGGCAGGGGGGTACATGTTCAGCGTGTGCTCTGCCACGGGGGTCTGGCCCGGGTAGTCTGGAGTCGGGTGAGGGTGGGACGGCGTGTACTCAGCAGGAATGCCGTTCTGAGGGGGAGCGAACTGGGCCGATGGGTAAGGCTGGGCCATGGTTTCTGGGGGTGCTGGGGCGAGGGAGATAG

Function

NR:

description
PREDICTED: RNA binding protein fox-1 homolog 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27725 True 589 TUCP 0.43 2 10025818 10034467
TU27728 False 277 lncRNA 0.47 2 10034141 10103461

Neighbor

gene id symbol gene type direction distance location
LOC122341833 tmem114,LOC107738619,LOC107685939,LOC107733824,LOC107690318,LOC107568650 coding upstream 43180 9975372 ~ 9982638 (+)
carhsp1 carhsp1,LOC107576530,LOC107733846,LOC107690249,LOC107590589,LOC107738622 coding upstream 84590 9927112 ~ 9941228 (+)
nat15 nat15,naa60,LOC107690248,LOC107568044,LOC107685925,LOC107738623 coding upstream 98807 9920575 ~ 9927011 (+)
elavl3 elavl3,LOC107754020,LOC107674672,LOC107703356,LOC106607222,LOC102780136 coding upstream 117243 9892533 ~ 9908575 (+)
angptl8 NA coding upstream 162600 9860463 ~ 9863218 (+)
sept12 sept12,LOC107690244,LOC107568113,LOC107738615,LOC107685931,LOC107733855 coding downstream 139049 10242510 ~ 10296401 (+)
flr flr,LOC107568145,LOC107733869,LOC107738612,LOC107568167,LOC107680859 coding downstream 270641 10374102 ~ 10385643 (+)
alg1 alg1,LOC107733873,LOC107690237,LOC107738611,LOC107680860 coding downstream 287049 10390510 ~ 10394344 (+)
LOC122341728 lgals2a,LOC107690239,LOC107733834,LOC107568668,LOC107680883,LOC107568169 coding downstream 294382 10397843 ~ 10401045 (+)
cacna1ia LOC107690236,LOC107733827,LOC107561340,LOC107680839 coding downstream 319285 10422746 ~ 10571227 (+)
G18517 NA non-coding upstream 82665 9865786 ~ 9943153 (+)
G18549 prkcsh,LOC107703311,LOC107725022,LOC107754018,LOC107587972 non-coding upstream 114206 9910957 ~ 9911612 (+)
G18507 NA non-coding upstream 166645 9854603 ~ 9859173 (+)
G18502 ba1,ba2 non-coding upstream 241360 9775320 ~ 9784458 (+)
G18470 dnmt1,LOC107670489 non-coding upstream 422754 9602642 ~ 9603064 (+)
G18671 NA non-coding downstream 170513 10273974 ~ 10302050 (+)
G18744 NA non-coding downstream 468358 10571819 ~ 10579144 (+)
G18747 NA non-coding downstream 486061 10589522 ~ 10589819 (+)
G18757 NA non-coding downstream 535628 10639089 ~ 10639293 (+)
G18763 NA non-coding downstream 559785 10663246 ~ 10664532 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other upstream 226022 9798815 ~ 9799796 (+)
G18491 NA other upstream 275938 9739796 ~ 9749880 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other upstream 327903 9692949 ~ 9697915 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other upstream 840158 9184399 ~ 9185660 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other upstream 842528 9138467 ~ 9183290 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other downstream 588429 10691890 ~ 10698540 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other downstream 649298 10752759 ~ 10842507 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other downstream 1230280 11333741 ~ 11335825 (+)
G18949 NA other downstream 1265432 11368893 ~ 11369752 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 1669739 11773200 ~ 11833924 (+)

Expression


Co-expression Network