G18792


Basic Information

Item Value
gene id G18792
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10700277 ~ 10700619 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU28021
TTTTGCACAGCTGCTTCAAATGATCAAGCATTTTTTGCATGGAGTCCTCACTTAAGTTCAAGCTGAACTTCACTACAGGCTCACCCTTCTTAAGACTGAACAGTTtcagaattattaataaacactcAACAAACAAACTCACAAGGCATGTTTGCGTTGTACAGAAAGATGAATCAGCCATTATATTAAGGAACATAAATTGACAGTATAATTGTATAGGTATATATTTTagtgattattataaaaactataaattcaGTTATTTGAAGATGTTTGAACCTTACCCCAtcttaatgtattatttataattacttaCCTATGGATATCTTCAAACCAAAACACA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0042611 MHC protein complex cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU28021 True 343 lncRNA 0.38 1 10700277 10700619

Neighbor

gene id symbol gene type direction distance location
eif3d eif3d,LOC107732884,LOC107690232,LOC107680878 coding upstream 21596 10672523 ~ 10678681 (+)
sstr3 sstr3,LOC107690333,LOC107551151,LOC107680846,LOC107561344,LOC107732886 coding upstream 39193 10645904 ~ 10661084 (+)
rac2 rac2,LOC108276437,LOC107561353,LOC108436672,LOC107551172 coding upstream 61681 10626162 ~ 10638596 (+)
fam83fa fam83fa,LOC107690234,LOC107551173,LOC107732892,LOC107561349,LOC107680871,LOC107733829 coding upstream 82696 10607636 ~ 10617581 (+)
grap2a grap2a,LOC107690235,LOC107680873,LOC107561352,LOC107732893,LOC107733828,LOC107551143 coding upstream 92768 10595644 ~ 10607509 (+)
cacng2a cacng2a,cacng2,LOC107561356,LOC107680886,LOC107732897,LOC107729558,LOC107687643,LOC108434911 coding downstream 10708 10711327 ~ 10769397 (+)
ifi35 LOC107729476,LOC107687635,LOC107551164,LOC107680855,LOC107561363,LOC107732881 coding downstream 117111 10817730 ~ 10820947 (+)
LOC122341641 LOC107729475,LOC107687632,LOC107551163 coding downstream 173618 10874237 ~ 10885623 (+)
akt1s1 akt1s1,LOC107729505,LOC107687628,LOC107551160,LOC107732888,LOC107577586,LOC107564011 coding downstream 248059 10948678 ~ 10954729 (+)
mybpc2a mybpc2,LOC107729557,LOC107687621,LOC107680879,LOC107732898 coding downstream 277530 10978149 ~ 11006634 (+)
G18763 NA non-coding upstream 35745 10663246 ~ 10664532 (+)
G18757 NA non-coding upstream 60984 10639089 ~ 10639293 (+)
G18747 NA non-coding upstream 110458 10589522 ~ 10589819 (+)
G18744 NA non-coding upstream 121133 10571819 ~ 10579144 (+)
G18671 NA non-coding upstream 398227 10273974 ~ 10302050 (+)
G18790 si:ch73-233k15.2,LOC107690330,LOC107729516,LOC107561347,LOC107680847,LOC107732904 non-coding downstream 168 10700787 ~ 10701636 (+)
G18794 NA non-coding downstream 1675 10702294 ~ 10702806 (+)
G18807 NA non-coding downstream 86736 10787355 ~ 10789666 (+)
G18817 NA non-coding downstream 111205 10811824 ~ 10812786 (+)
G18828 NA non-coding downstream 126459 10827078 ~ 10828835 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other upstream 1737 10691890 ~ 10698540 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other upstream 596816 10025818 ~ 10103461 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other upstream 900481 9798815 ~ 9799796 (+)
G18491 NA other upstream 950397 9739796 ~ 9749880 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other upstream 1002362 9692949 ~ 9697915 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other downstream 52140 10752759 ~ 10842507 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other downstream 633122 11333741 ~ 11335825 (+)
G18949 NA other downstream 668274 11368893 ~ 11369752 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 1072581 11773200 ~ 11833924 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other downstream 1185036 11885655 ~ 11893656 (+)

Expression


Co-expression Network