G18932 (ppp1caa,pp1g,LOC105897688)


Basic Information

Item Value
gene id G18932
gene name ppp1caa,pp1g,LOC105897688
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11270202 ~ 11271106 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU28212
CTCACACTCATCATAGAAGCCATATATACGATTGATAGAGGCGCACTCATGGTTGCCACGCAGCAGGAAGAAGTTTTCAGGATATTTGACTTTGTAGGCCAATAGGAGGCAGATGGTCTCTAGAGACTGTTTCCCTCTGTCCACATAGTCCCCCAGGAACAAATAGTTGCTCTCAGGAGGAAAGCCGCCATACTCAAAGAGACGAAGGAGGTCATAGTACTGACCATGAACGCACCGCAGATCTTGAGCGGTGCTTCCAGCTCCAGCAGAATTGGCTGGCTGAGGAAAATTTCCCGAGATTTGAGACAGAGGCCACGGATTTCACTCTCTGTCAGCTGTACGTTCTTGCCTGGCCTGGAGCCTTTAACTGgaaaaacacaagcaaacagAAGGGACGAAATGAGAAAAGCAGGAAATCAGCcaaatgaaaaaagcaaacGTGCCAGATTAGACACAATAAGTGGTTTAAAAACTAGGAAGATCTAGAGGATGATAAAACTTAACTCAAGAAGCCTCTCTGAAATGATGTGATGTAAAGACTCAGTGACACACAGACATCAGTGCACTTAAACTCCATAGCATGCGTCTCTGCTCAAGTATGCAGACTAAAGGCATTCACagaatttcagtttgtttaagCATTCCTTAACATGTCAAATGCACACCAACACAACCGCCGCATATGGCTTTTTACAAGCACGACACAGTTTAAAGCTCTCCTCCGAGTAACCTTTGAACAGTTTTTGAAGATCATGTGCAACTGAACTTCAGATAGAATCAAATATTCA

Function

symbol description
ppp1caa Predicted to enable protein serine phosphatase activity and protein threonine phosphatase activity. Acts upstream of or within convergent extension. Is expressed in brain; digestive system; eye; otic vesicle; and pectoral fin. Orthologous to human PPP1CA (protein phosphatase 1 catalytic subunit alpha).

NR:

description
protein phosphatase 1, catalytic subunit, alpha

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28212 True 788 lncRNA 0.43 2 11270202 11271106

Neighbor

gene id symbol gene type direction distance location
mybpc2a mybpc2,LOC107729557,LOC107687621,LOC107680879,LOC107732898 coding upstream 263568 10978149 ~ 11006634 (+)
akt1s1 akt1s1,LOC107729505,LOC107687628,LOC107551160,LOC107732888,LOC107577586,LOC107564011 coding upstream 315473 10948678 ~ 10954729 (+)
LOC122341641 LOC107729475,LOC107687632,LOC107551163 coding upstream 384579 10874237 ~ 10885623 (+)
ifi35 LOC107729476,LOC107687635,LOC107551164,LOC107680855,LOC107561363,LOC107732881 coding upstream 449255 10817730 ~ 10820947 (+)
cacng2a cacng2a,cacng2,LOC107561356,LOC107680886,LOC107732897,LOC107729558,LOC107687643,LOC108434911 coding upstream 500805 10711327 ~ 10769397 (+)
cldni LOC107729510 coding downstream 7631 11278737 ~ 11281741 (+)
prf1.9 LOC107729509,LOC107583107,LOC107658427 coding downstream 34219 11305325 ~ 11308557 (+)
prf1.1 prf1.1,LOC107658428,LOC107583105,LOC107729447,LOC107732857,LOC107674141,LOC107564016 coding downstream 37576 11308682 ~ 11313369 (+)
si:dkey-66i24.7 si:dkey-66i24.7,LOC107674138,LOC107732877,LOC107658448,LOC107563999,LOC107729523 coding downstream 73163 11344269 ~ 11345934 (+)
si:dkey-66i24.8 LOC107658431,LOC107583056,LOC107729444,LOC107732851 coding downstream 91877 11362983 ~ 11367115 (+)
LOC122336311 NA non-coding upstream 77207 11189556 ~ 11192995 (+)
LOC122336295 NA non-coding upstream 107295 11161878 ~ 11162907 (+)
LOC122342197 NA non-coding upstream 107759 11162354 ~ 11162443 (+)
G18903 syt3,LOC107680842,LOC106593647,LOC107551154,LOC107563990 non-coding upstream 159777 11108748 ~ 11110425 (+)
G18879 NA non-coding upstream 173784 11021328 ~ 11096418 (+)
G18945 NA non-coding downstream 62 11271168 ~ 11370981 (+)
G18960 paqr4a,paqr4,LOC107674132 non-coding downstream 18641 11289747 ~ 11294605 (+)
G18982 NA non-coding downstream 100396 11371502 ~ 11375401 (+)
G18946 smg1,LOC107729485,LOC107583093,LOC107658410,LOC107732845 non-coding downstream 109167 11380273 ~ 11380790 (+)
G19123 NA non-coding downstream 165838 11436944 ~ 11437197 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other upstream 427695 10752759 ~ 10842507 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other upstream 571662 10691890 ~ 10698540 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other upstream 1166741 10025818 ~ 10103461 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other upstream 1470406 9798815 ~ 9799796 (+)
G18491 NA other upstream 1520322 9739796 ~ 9749880 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other downstream 62635 11333741 ~ 11335825 (+)
G18949 NA other downstream 97787 11368893 ~ 11369752 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 502094 11773200 ~ 11833924 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other downstream 614549 11885655 ~ 11893656 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 756043 12027149 ~ 12049422 (+)

Expression


Co-expression Network