G18945


Basic Information

Item Value
gene id G18945
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11271168 ~ 11370981 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU28227
tatttttttttttttttttttttttagttttaaatcagtttattgttgtgctgaacacactcaaaccacaaaaaaatgacagttaAAAGAACAGAGGAGAGAAGACAAACTTAAGACAAGCCAGTGGAAACAAAGAAATacaaggaggaaaaaaaacacacgtaTATACAGCCCAGCAGGTGTTGGATTGGGAAGTGGCTAGAGCTAGAGGACAGCAATGAGGTCCACGCAGCCCTAGTACAGCAGTACGGGTCTAAGCTTCCCTACACAAACACTCCAGTTCTCTTTTTCCAGTGCAATTTTCAGAACAGTGcagaaatgcatgttttcaAGCCATCCGAGGAAGAAGGCTTCCCATGATGTGTCCTGTGCATCCAATTAGCTAAAGTAAAGGTTCGGGAGTCGCTTcgtcgatttaaaaaaaaatgaattagaaGAAATTAAGCGCTCGTTATATTTTGCACAGACTTAACATTTACTATGACATGCAAATACAAGTGGGTGTAAAAACGGCTGAAACGAATGCAACATTTCagtgtttgagaaaaaaaaaaattactttagatgaaaaacaaatgcataatttgaaatgaaacctaaaaccaaaacacGTGAACTTCACGAGATATCTGCGTACAATTAAGCTGTTTACTAGATGTTACTTTTCACTATCAGCTCAGGCTTTACATTGGTCTGTTGTGATCTGACGTTCAGTGGGGGCAGATGACAAGTTTTTAACACTTAAGTTGATCAGAATTTCACTTTTCATTTGAGCATAACCTTTCACTcgttcttcttctccttctgtTTAAGTAGTTTGTTGATCTCTCTCTTGGCCATCCCAGCGTATTTGGTGATGATGCCATGCTGGTTAAGGCCAGGCAATAGCAGAAGGAAACTCA
>TU28229
tattttttttttttttttttttttACAAGGAGTGGAAAAGGgctgattttaattaatttaaacgcAGTTACAGATACTGCAgcatgattttcttttctgtttttaacttttttttttgtttgtttgtttttgcaagaGCACTGTGAAGAAACACTGCCATCACTGAGAAGAATAGGGGTGAGTTCGCAAAAACATTAGGATCTGTTTTTGGGATGAACACAATGTCAGAATCTGTGTTAAAGTTAAACATTCACTTGTTCAAGCAACTGCGCCCAAAGGCTTCATTCTTATtgatctttacatttttacttgatTCTTTccactattttaaaatgccacacacgcgcactctcacacacacacacacacaaaaaagaaacaaaaacagactaGCATTTACACTCCCCTttgatttaaatacaaaaatcaggGAATTAAATGTCAATACTTAAGCTTTCaaacaaatgttcaaaaagaaacAAGCGGACGCCACTACACTCCTCCAACAAAAAGAAGGGTAAAGAAAAGCAACACACACTTCAGGAATCAACAATGCGAgtggaaaaatgtatttacaatgaAACCACTGTATGTCAGAATTCACCTTAACCATGTGCTGTGTATTCATTCGCAGGCATCCATGCCCACTCTGATGTTCAGTAAGTTCCATGTGCATTTACACTATATTAAGTTGGTAACATAAAACGCTTCAGCCTATGGCCTTCTGCACCCCAATAAAATTATACAGGATctaaataagaataattataatatcaaTACTCATTAACACACAATAGCGTACTGTAAATGCGATCAGTAAAGTGGGCATTTGTAAAACCTCACAGCCACAAACACAAACCCACCCCACCCCTATCagattgaaacacacacacacacacacacaccaaaaaaaaaagaaaaaaaaaagcacaaaacgtTTAACTCTCCAAACATAACATCTGCGTGAATTAAATAAGAAGCACGGGTTTAAATACTCAGATATCTAACCACCTCCGACAGGTGACTAACAGCTGTCTGACAAATGAGCAATTCGTCCAGAAATCAAAGGGAAACATTACCAAATCAAAATGGGACGCTGTGATTGGTGGATTAACCTGTAGATGAGCAGACACTGGACATTGGAAGGGTTTGCGACAATACAGTGAGAGTAAGCTGCTAGTGCTCGACGGGACGTGAGGAGGAACAGGGAGAGCGATTCAAATTCTCAGCAAAGTTACAATATCACACAAGATCACTCTCACTCATGCTTCCCCCCCCCCTCTTTTTGTAACTCAATATGCACCACCATCTTAAAACGCACATGTTTTGCTTGTC
>TU28230
tattttttttttttttttttagttttaaatcagtttattgttgtgctgaacacactcaaaccacaaaaaaatgacagttaAAAGAACAGAGGAGAGAAGACAAACTTAAGACAAGCCAGTGGAAACAAAGAAATacaaggaggaaaaaaaacacacgtaTATACAGCCCAGCAGGTGTTGGATTGGGAAGTGGCTAGAGCTAGAGGACAGCAATGAGGTCCACGCAGCCCTAGTACAGCAGTACGGGTCTAAGCTTCCCTACACAAACACTCCAGTTCTCTTTTTCCAGTGCAATTTTCAGAACAGTGcagaaatgcatgttttcaAGCCATCCGAGGAAGAAGGCTTCCCATGATGTGTCCTGTGCATCCAATTAGCTAAAGTAAAGGTTCGGGAGTCGCTTcgtcgatttaaaaaaaaatgaattagaaGAAATTAAGCGCTCGTTATATTTTGCACAGACTTAACATTTACTATGACATGCAAATACAAGTGGGTGTAAAAACGGCTGAAACGAATGCAACATTTCagtgtttgagaaaaaaaaaaattactttagatgaaaaacaaatgcataatttgaaatgaaacctaaaaccaaaacacGTGAACTTCACGAGATATCTGCGTACAATTAAGCTGTTTACTAGATGTTACTTTTCACTATCAGCTCAGGCTTTACATTGGTCTGTTGTGATCTGACGTTCAGTGGGGGCAGATGACAAGTTTTTAACACTTAAGTTGATCAGAATTTCACTTTTCATTTGAGCATAACCTTTCACTcgttcttcttctccttctgtTTAAGTAGTTTGTTGATCTCTCTCTTGGCCATCCCAGCGTATTTGGTGATGATGCCATGCTGGTTAAGGCCAGGCAATAGCAGAAGGAAACTCA
>TU28231
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattactttagatgaaaaacaaatgcataatttgaaatgaaacctaaaaccaaaacacGTGAACTTCACGAGATATCTGCGTACAATTAAGCTGTTTACTAGATGTTACTTTTCACTATCAGCTCAGGCTTTACATTGGTCTGTTGTGATCTGACGTTCAGTGGGGGCAGATGACAAGTTTTTAACACTTAAGTTGATCAGAATTTCACTTTTCATTTGAGCATAACCTTTCACTcgttcttcttctccttctgtTTAAGTAGTTTGTTGATCTCTCTCTTGGCCATCCCAGCGTATTTGGTGATGATGCCATGCTGGTTAAGGCCAGGCAATAGCAGAAGGAAACTCACTGTTGGATACGAAACAGAAAATGAGCAGACAATCA

Function

NR:

description
PREDICTED: protein BTG1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28227 False 902 lncRNA 0.38 2 11326598 11370945
TU28229 True 1335 lncRNA 0.38 2 11326598 11352775
TU28230 False 897 lncRNA 0.40 2 11326598 11370945
TU28231 False 430 lncRNA 0.54 2 11271168 11370981

Neighbor

gene id symbol gene type direction distance location
mybpc2a mybpc2,LOC107729557,LOC107687621,LOC107680879,LOC107732898 coding upstream 264534 10978149 ~ 11006634 (+)
akt1s1 akt1s1,LOC107729505,LOC107687628,LOC107551160,LOC107732888,LOC107577586,LOC107564011 coding upstream 316439 10948678 ~ 10954729 (+)
LOC122341641 LOC107729475,LOC107687632,LOC107551163 coding upstream 385545 10874237 ~ 10885623 (+)
ifi35 LOC107729476,LOC107687635,LOC107551164,LOC107680855,LOC107561363,LOC107732881 coding upstream 450221 10817730 ~ 10820947 (+)
cacng2a cacng2a,cacng2,LOC107561356,LOC107680886,LOC107732897,LOC107729558,LOC107687643,LOC108434911 coding upstream 501771 10711327 ~ 10769397 (+)
clec19a clec19a,LOC107658453,LOC107583104,LOC107736754 coding downstream 37056 11408037 ~ 11413269 (+)
LOC122341817 c1ql1,LOC107729572,LOC107658458,LOC107583048,LOC107674128,LOC103367899,LOC101070426,LOC104923905 coding downstream 126672 11497653 ~ 11515159 (+)
ccdc43 LOC107674137,LOC107729438,LOC107583050,LOC107658459,LOC107721961,LOC107564021 coding downstream 220619 11591600 ~ 11594168 (+)
fzd2 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC107721960,LOC107564008,LOC107674136 coding downstream 232693 11603674 ~ 11606177 (+)
mylk5 LOC107583040,LOC107729567,LOC107658462 coding downstream 245214 11616195 ~ 11629282 (+)
G18932 ppp1caa,pp1g,LOC105897688 non-coding upstream 62 11270202 ~ 11271106 (+)
LOC122336311 NA non-coding upstream 78173 11189556 ~ 11192995 (+)
LOC122336295 NA non-coding upstream 108261 11161878 ~ 11162907 (+)
LOC122342197 NA non-coding upstream 108725 11162354 ~ 11162443 (+)
G18903 syt3,LOC107680842,LOC106593647,LOC107551154,LOC107563990 non-coding upstream 160743 11108748 ~ 11110425 (+)
G18982 NA non-coding downstream 521 11371502 ~ 11375401 (+)
G18946 smg1,LOC107729485,LOC107583093,LOC107658410,LOC107732845 non-coding downstream 9292 11380273 ~ 11380790 (+)
G19123 NA non-coding downstream 65963 11436944 ~ 11437197 (+)
G19126 NA non-coding downstream 69525 11440506 ~ 11441338 (+)
G19184 NA non-coding downstream 341628 11712609 ~ 11719579 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other upstream 428661 10752759 ~ 10842507 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other upstream 572628 10691890 ~ 10698540 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other upstream 1167707 10025818 ~ 10103461 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other upstream 1471372 9798815 ~ 9799796 (+)
G18491 NA other upstream 1521288 9739796 ~ 9749880 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 402219 11773200 ~ 11833924 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other downstream 514674 11885655 ~ 11893656 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 656168 12027149 ~ 12049422 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other downstream 721622 12092603 ~ 12100852 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other downstream 743067 12114048 ~ 12117939 (+)

Expression


Co-expression Network