pax10 (pax10,LOC107554109,LOC107658497,LOC107730756)


Basic Information

Item Value
gene id pax10
gene name pax10,LOC107554109,LOC107658497,LOC107730756
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12114048 ~ 12117939 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU28697
CAGGATTCTTTCCCGGTGTTTCCGCAGCAGGGCAGACTGCAGTTCAAGGTGGCGATCAGGAGCTGGGACAAGGTCTGGGTCAGTACTGGACGAgactgcagtaaaaaaaaacacaccttgTCATTATCAGACAAAACCAGCAGAGCTTCAATCAgcaaattatttaacaaaacgtGTGTCAGGAAACCCTACTTATTTAGATTATGTATGCATCAGGGAAGCAGTCTATGTAAGCCATAATCTTGTGAAAAAAGTGGACCTCACAAACCTGCACAAAGGGAAGAGACAACGGACTCCAGCCTTTTTGATCTGCACAGTTATATAGGCTTACTCAGCAGCACCATGCCAGATAATGGCAAAGACTAGTCAGGTTAACATTCTCAGCTATTGGAGCATCTAAAACATTAACAGAGGCCAACACCTTGCCTCGTGTTGATGCAAcgaaaaatgctgtttaattgATGTGCCACTTACAATCCGTGTGATAAACTGCATATGACCAAAAATGTATCTgccgtttaaaagtttgggtttgCTAAAATATTTCGATGTTTCATATGCTTAACA
>XM_043235680.1
ATGTACGACAGTCTGACCATGCTGAACTTACAAAACGGCTCCAACTGGACTGGCCCAAACAACTGGTACCACCCGGCCGACAGCATCACTCCTCAACACGGAACAGATGGTTGCGTGGAAGATCTGAATGTGCAGATGGCCGGAGCGGGGGAAGGAGTGGTGCAGGGAGAGAGGGATGAGGTGGACGAGTCACAGCTACACCTGCAGCTAAAGAGGAAGCTGCAGAGGAACCGCACCAGCTTCACCCAGGAGCAGATAGATGCCCTGGAGAAAGAGTTTGAAAGGACTCATTACCCAGATGTCTTTGCTAGAGAGAGACTGGCTGCAAAGATTGATCTTCCAGAGGCCAGAATTCAGGTATGGTTCTCCAATCGGAGAGCTAAGTGGAGAAGGGAGGAAAAGCTGAGAAACCAGAGGAGATCAGGGGGCACCAGTTCCTGTTCTCAGACACATACTCCCCTGAGCACATCCTTTACCTCCCCTGTATATCACTCCCATCACAGCAACAGCTCAGGCTCAATGCACAGTCGGAGTGATTCGTCTCTCTCAGGCTATAgttctctgtctgtcttctcCAGTATGCAGTCTTTGCCCTCCCAGTCTACTCCAACTTACTCTTGCATGTTGCCTCCCTCTCCTTCTGCCCTGCCCCCTCTTTCCCGTAAATTTGACTCCTCATCTTACACCTCTCCCCACCTCCCGCCCCCACCCACGGCCAGCGCAAACACAGGATTCTTTCCCGGTGTTTCCGCAGCAGGGCAGACTGCAGTTCAAGGTGGCGATCAGGAGCTGGGACAAGGTCTGGGTCAGTACTGGACGAgactgcagtaaaaaaaaacacaccttgTCATTATCAGACAAAACCAGCAGAGCTTCAATCAgcaaattatttaacaaaacgtGTGTCAGGAAACCCTACTTATTTAGATTATGTATGCATCAGGGAAGCAGTCTATGTAAGCCATAATCTTGTGAAAAAAGTGGACCTCACAAACCTGCACAAAGGGAAGAGACAACGGACTCCAGCCTTTTTGATCTGCACAGTTATATAGGCTTACTCAGCAGCACCATGCCAGATAATGGCAAAGACTAGTCAGGTTAACATTCTCAGCTATTGGAGCATCTAAAACATTAACAGAGGCCAACACCTTGCCTCGTGTTGATGCAAcgaaaaatgctgtttaattgATGTGCCACTTACAATCCGTGTGATAAACTGCATATGACCAAAAATGTATCTgccgtttaaaagtttgggtttgCTAAAATATTTCGATGTTTCATATGCTTAACAAGGGTgcaattattgatttaaaaatacagt

Function

symbol description
pax10 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within retina development in camera-type eye. Predicted to be located in nucleus. Is expressed in brain; eye; head; retina; and testis.

NR:

description
PREDICTED: paired box protein Pax-6-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28697 False 567 lncRNA 0.42 1 12117343 12117909
XM_043235680.1 True 1324 mRNA 0.48 7 12114048 12117939

Neighbor

gene id symbol gene type direction distance location
LOC122342107 nosip,LOC107583007,LOC107658495,LOC107729514,LOC107730754,LOC107554107 coding upstream 11116 12098906 ~ 12102932 (+)
trpm4a trpm4a,LOC107730751,LOC107689664,LOC107554101,LOC107729419,LOC107583009 coding upstream 23843 12075141 ~ 12090205 (+)
scaf1 LOC107729496,LOC107658492,LOC107583012,LOC107730764,LOC107554099 coding upstream 41898 12062091 ~ 12072150 (+)
LOC122342085 LOC107729420,LOC107730741,LOC107554113,LOC107689667 coding upstream 52518 12060131 ~ 12061530 (+)
prrg2 LOC107730734,LOC107583014,LOC107554111,LOC107729459 coding upstream 87114 12024187 ~ 12026934 (+)
bcl2l12 LOC107689657,LOC107658496,LOC107554114,LOC107583005,LOC107729416 coding downstream 2735 12120674 ~ 12127106 (+)
unc119.2 LOC107658437,LOC107689658,LOC107730769,LOC107583101,LOC107729484 coding downstream 23362 12141301 ~ 12143887 (+)
mmp25a LOC107730750,LOC107689654,LOC107729415,LOC107658423,LOC107554116 coding downstream 27172 12145111 ~ 12149131 (+)
srrm2 LOC107729482,LOC107583001,LOC107554117,LOC107689653,LOC107730748 coding downstream 31858 12149797 ~ 12158601 (+)
thoc6 thoc6,LOC107729483,LOC107583000,LOC107689651,LOC107730738 coding downstream 41243 12159182 ~ 12162641 (+)
G19257 NA non-coding upstream 39545 12074231 ~ 12074503 (+)
G19255 NA non-coding upstream 40975 12072719 ~ 12073073 (+)
G19208 NA non-coding upstream 140042 11967648 ~ 11974006 (+)
LOC122338225 NA non-coding upstream 278795 11834772 ~ 11835253 (+)
G19184 NA non-coding upstream 394469 11712609 ~ 11719579 (+)
G19263 NA non-coding downstream 599 12118538 ~ 12118775 (+)
G19274 NA non-coding downstream 14690 12132629 ~ 12134957 (+)
G19287 NA non-coding downstream 109996 12227935 ~ 12228520 (+)
G19579 NA non-coding downstream 563319 12681258 ~ 12681565 (+)
G19575 LOC107690704 non-coding downstream 564879 12682818 ~ 12686371 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other upstream 13196 12092603 ~ 12100852 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other upstream 64626 12027149 ~ 12049422 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other upstream 220392 11885655 ~ 11893656 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other upstream 280124 11773200 ~ 11833924 (+)
G18949 NA other upstream 744296 11368893 ~ 11369752 (+)
LOC122341822 LOC107582992,LOC107729455,LOC107554125,LOC107737756,LOC107689687 other downstream 114488 12232427 ~ 12249997 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other downstream 185425 12303364 ~ 12315046 (+)
G19326 NA other downstream 393987 12511926 ~ 12513721 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other downstream 401898 12519837 ~ 12528803 (+)
LOC122332158 LOC107583070,LOC107737766 other downstream 717442 12835381 ~ 12987913 (+)

Expression


Co-expression Network