LOC122330904


Basic Information

Item Value
gene id LOC122330904
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11968594 ~ 11975569 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU28909
CCTGGAGAAGAAGGCGTGGATCCAGTAGCTACTTAATGCGTTCCGTTCAAAAATAGGcctattcattttgttttccaggTAAATCTCGCCAGATCCTTCCGGGCTGCAGATCCAGGAGCGCACGGATCACACCAACGCCACAGAACCATGTCGGACTCAGAGACTGCAGCTCCTGCCGAGACCCCTGTCCCAGCACCCTGTGTGGCCATCAAGACCGACCTAGACAAATGTGTAAAGGAGAGTGGCGAGGAAGCGTGCAAGGAGCTGATGGAGGCGTTTGCTGCCTGTGTGAAGAGCAATGCTGAGGCGTCATGAGGAGCTCAACATGCAGGAAAAGGTTTTACTGCACTGAGTCCTCCACCTTCCCAGCATTCCCTGCAGCTCATGGCACTGGACTAAATGATGAGGTTTGGGGTTTGGCAACGGAGACCATATTAGTGTCTCTTTCCTTCTCTACCCCCCCGTGAAACTTAAATGGATTCCTCCAACCTCCCCTTCTTCTTTGTGGCTGATTGTATTGATCAGA
>TU28910
tctctctttttctcttgcaCATGCAACCACAGGAGCGCACGGATCACACCAACGCCACAGAACCATGTCGGACTCAGAGACTGCAGCTCCTGCCGAGACCCCTGTCCCAGCACCCTGTGTGGCCATCAAGACCGACCTAGACAAATGTGTAAAGGAGAGTGGCGAGGAAGCGTGCAAGGAGCTGATGGAGGCGTTTGCTGCCTGTGTGAAGAGCAATGCTGAGGCGTCATGAGGAGCTCAACATGCAGGAAAAGGTTTTACTGCACTGAGTCCTCCACCTTCCCAGCATTCCCTGCAGCTCATGGCACTGGACTAAATGATGAGGTTTGGGGTTTGGCAACGGAGACCATATTAGTGTCTCTTTCCTTCTCTACCCCCCCGTGAAACTTAAATGGATTCCTCCAACCTCCCCTTCTTCTTTGTGGCTGATTGTATTGATCAGA
>XR_006248096.1
TGTGTCCCCTGCATCGGGGCGTTTCTCCTCCCTCAAGACTCCTGGAGAAGAAGGCGTGGATCCAGTAGCTACTTAATGCGTTCCGTTCAAAAATAGGcctattcattttgttttccaggTAAATCTCGCCAGATCCTTCCGGGCTGCAGATCCAGGAGCGCACGGATCACACCAACGCCACAGAACCATGTCGGACTCAGAGACTGCAGCTCCTGCCGAGACCCCTGTCCCAGCACCCTGTGTGGCCATCAAGACCGACCTAGACAAATGTGTAAAGGAGAGTGGCGAGGAAGCGTGCAAGGAGCTGATGGAGGCGTTTGCTGCCTGTGTGAAGAGCAATGCTGAGGCGTCATGAGGAGCTCAACATGCAGGAAAAGGTTTTACTGCACTGAGTCCTCCACCTTCCCAGCATTCCCTGCAGCTCATGGCACTGGACTAAATGATGAGGTTTGGGGTTTGGCAACGGAGACCATATTAGTGTCTCTTTCCTTCTCTACCCCCCCGTGAAACTTAAATGGATTCCTCCAACCTCCCCTTCTTCTTTGTGGCTGATTGTATTGATCAGATCTGTAGACAGTTTGAGAGTTAATGTAAATGTGTCTCAGATGCTTTCAAAATggaataaagatttaaaaaatg

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function
GO:0035379 carbon dioxide transmembrane transporter activity molecular_function

KEGG:

id description
ko04640 Hematopoietic cell lineage

RNA

RNA id representative length rna type GC content exon number start site end site
TU28909 False 526 lncRNA 0.52 4 11968667 11975529
TU28910 False 443 lncRNA 0.52 3 11968667 11973683
XR_006248096.1 True 639 lncRNA 0.50 4 11968594 11975569

Neighbor

gene id symbol gene type direction distance location
brsk1b LOC107658484,LOC107548343,LOC108427376,LOC108274928 coding downstream 2646 11949110 ~ 11965948 (-)
cpt1a2b cpt1cb,LOC107730771,LOC107689673,LOC107548342,LOC106600940 coding downstream 20039 11924369 ~ 11948555 (-)
pih1d1 LOC107583023,LOC107658482,LOC107729529,LOC107730744,LOC107548339 coding downstream 60801 11901129 ~ 11907793 (-)
tnnt1 tnnt1,LOC107583024,LOC107729530 coding downstream 67867 11893395 ~ 11900727 (-)
baxb LOC107729453,LOC107658432,LOC107729452,LOC107548291,LOC107693506,LOC107730775,LOC107548334 coding downstream 124984 11837643 ~ 11843610 (-)
prmt1 prmt1,LOC107729532,LOC107658485,LOC107689671 coding upstream 13533 11989102 ~ 11993163 (-)
si:ch211-195b15.7 si:ch211-195b15.7,LOC107658491,LOC107689666,LOC107554103,LOC107730731 coding upstream 73888 12049457 ~ 12059549 (-)
rcn3 rcn3,LOC107729515,LOC107730752,LOC107689660,LOC107583008,LOC107554106 coding upstream 127373 12102942 ~ 12106684 (-)
tspan4b tspan4b,LOC107729542,LOC107658498,LOC107554115,LOC107730770,LOC108427360,LOC107583081 coding upstream 151441 12127010 ~ 12131799 (-)
si:ch73-248e21.7 NA coding upstream 157027 12132596 ~ 12136213 (-)
G19385 NA non-coding downstream 96688 11867007 ~ 11871906 (-)
G19381 NA non-coding downstream 124395 11844014 ~ 11844199 (-)
G19375 NA non-coding downstream 196946 11769722 ~ 11771648 (-)
G19117 NA non-coding downstream 557878 11410335 ~ 11410716 (-)
G19108 NA non-coding downstream 632794 11333756 ~ 11335800 (-)
G19422 NA non-coding upstream 44014 12019583 ~ 12023427 (-)
G19427 NA non-coding upstream 50795 12026364 ~ 12026940 (-)
G19436 NA non-coding upstream 69080 12044649 ~ 12045400 (-)
G19453 LOC107583009,LOC107729419,LOC107658421,LOC107730751,LOC107554101,LOC107689664 non-coding upstream 109760 12085329 ~ 12086221 (-)
G19463 NA non-coding upstream 117330 12092899 ~ 12097362 (-)
LOC122341756 NA other downstream 47827 11909775 ~ 11920767 (-)
G19383 NA other downstream 87635 11853748 ~ 11880959 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other downstream 240593 11712820 ~ 11728001 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other downstream 253875 11694272 ~ 11714719 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other downstream 539415 11411985 ~ 11429179 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other upstream 363618 12339187 ~ 12343872 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other upstream 647214 12622783 ~ 12679800 (-)
cacna1aa LOC107690704,LOC107571502 other upstream 706421 12681990 ~ 12763090 (-)
G19676 LOC107690708 other upstream 1030427 13005996 ~ 13068190 (-)
G19700 NA other upstream 1071472 13047041 ~ 13047494 (-)

Expression


Co-expression Network