G19427


Basic Information

Item Value
gene id G19427
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12026364 ~ 12026940 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU28944
TTCGTCTacgttttatttcttttattaacaaTGAAAGCGGAATTCCATTTGatagaacttaaaaaaaaatgaacaaatccgATTTATGAAAATATCGTTCACACTGATGACAGCAAAATAATTCTAAAGGAGTAAAACAGGTTTAACTGCTGAACATGTAGCACAAGTGTAATAAATTATCTACTGACTGAAGCTGCACTTTTTCACCAGTAAAAAACCCTATATCACCCCGTCCCCCCTCCCCCATTTAAAAACGACATCATGTCCTTGTCATTCCTCTTCTTGAGTTTGTGGTGGCTCGGATGGACTTTCCCTAGTACGGCGGTGGAGGTGCATCATGCTGGCCACTGTGGGTCAAAGCCTCATTGTACGAGGGGAGACCTGGAGCCCTGCTAGCCAAGGGCACAGATTCCGGTATTGGCTGCCCATCAACACCCATATGCACAGGAACA

Function

GO:

id name namespace
GO:0051090 regulation of DNA-binding transcription factor activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28944 True 452 lncRNA 0.43 2 12026364 12026940

Neighbor

gene id symbol gene type direction distance location
prmt1 prmt1,LOC107729532,LOC107658485,LOC107689671 coding downstream 33201 11989102 ~ 11993163 (-)
brsk1b LOC107658484,LOC107548343,LOC108427376,LOC108274928 coding downstream 60416 11949110 ~ 11965948 (-)
cpt1a2b cpt1cb,LOC107730771,LOC107689673,LOC107548342,LOC106600940 coding downstream 77809 11924369 ~ 11948555 (-)
pih1d1 LOC107583023,LOC107658482,LOC107729529,LOC107730744,LOC107548339 coding downstream 118571 11901129 ~ 11907793 (-)
tnnt1 tnnt1,LOC107583024,LOC107729530 coding downstream 125637 11893395 ~ 11900727 (-)
si:ch211-195b15.7 si:ch211-195b15.7,LOC107658491,LOC107689666,LOC107554103,LOC107730731 coding upstream 22517 12049457 ~ 12059549 (-)
rcn3 rcn3,LOC107729515,LOC107730752,LOC107689660,LOC107583008,LOC107554106 coding upstream 76002 12102942 ~ 12106684 (-)
tspan4b tspan4b,LOC107729542,LOC107658498,LOC107554115,LOC107730770,LOC108427360,LOC107583081 coding upstream 100070 12127010 ~ 12131799 (-)
si:ch73-248e21.7 NA coding upstream 105656 12132596 ~ 12136213 (-)
si:ch73-248e21.5 NA coding upstream 109778 12136718 ~ 12140766 (-)
G19422 NA non-coding downstream 2937 12019583 ~ 12023427 (-)
LOC122330904 NA non-coding downstream 50795 11968594 ~ 11975569 (-)
G19385 NA non-coding downstream 154458 11867007 ~ 11871906 (-)
G19381 NA non-coding downstream 182165 11844014 ~ 11844199 (-)
G19375 NA non-coding downstream 254716 11769722 ~ 11771648 (-)
G19436 NA non-coding upstream 17709 12044649 ~ 12045400 (-)
G19453 LOC107583009,LOC107729419,LOC107658421,LOC107730751,LOC107554101,LOC107689664 non-coding upstream 58389 12085329 ~ 12086221 (-)
G19463 NA non-coding upstream 65959 12092899 ~ 12097362 (-)
G19503 NA non-coding upstream 155318 12182258 ~ 12182484 (-)
G19518 LOC107729456,LOC107658501,LOC107582995,LOC107554123,LOC107689649,LOC107737759 non-coding upstream 199635 12226575 ~ 12230379 (-)
LOC122341756 NA other downstream 105597 11909775 ~ 11920767 (-)
G19383 NA other downstream 145405 11853748 ~ 11880959 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other downstream 298363 11712820 ~ 11728001 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other downstream 311645 11694272 ~ 11714719 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other downstream 597185 11411985 ~ 11429179 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other upstream 312247 12339187 ~ 12343872 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other upstream 595843 12622783 ~ 12679800 (-)
cacna1aa LOC107690704,LOC107571502 other upstream 655050 12681990 ~ 12763090 (-)
G19676 LOC107690708 other upstream 979056 13005996 ~ 13068190 (-)
G19700 NA other upstream 1020101 13047041 ~ 13047494 (-)

Expression


Co-expression Network