LOC122342093 (LOC107583078,LOC107754431,LOC107583076)


Basic Information

Item Value
gene id LOC122342093
gene name LOC107583078,LOC107754431,LOC107583076
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12339187 ~ 12343872 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU29090
ACACACGAATCAAGTGTGACTTTCAACCTTTCTAATGTAGACGTCTCTTTTCAGGGCAGCTACAGCTGTCTTTACTCCTACCTAAACAACGCTGTCAAATCACCTTTCAGCAGCATTATTACCATCACTGTGGTGGACTTGCAGCAGCCCAGCATTTCTCACAGTTATCCTGACGGGTCTCAGGGGCCGGTGATCACCAGGGGCCACAGTTTCACTATCATCTGTTCAACTCAATCTCAGCATCCTGGAGGCTCTTTTCTCCTGTTCAGAGGATCAGACATCACCGGGACTGAGTCAGATGTTAATCTCTCTTCCTCCTTCTTCTTTCCTGAGGCAGATTACTCACACGAGGGAAACTACAGCTGTGTTTATGAAGTCAGTGTCTCCTCTCGCTCCTTCCGTTCATCTGCCTCTGATCTGCTGCTCATCACTATCACAGcCTCCCTGCTTCCTGTCATTGGTGCTGCAGTGTCAGCTGTGCTGCTCTTGTTGTCTGGTCTCATAATCTTCCTCCTGCTCAAGAGAAGACGACAGCAAAGGAACATGGAAACTCATTTAAAGTGCTCTTTTACGAAAGGTCAAGCTGCATCACGTACTAGCAGAAATGAAGAGGATGATGAGGCTGATTATGAAAATATTGAACTTGATGAAAACATG
>XM_043235877.1
AGTGTTCTGACTTCTGTGACGGGCATAAGATTGGTCAGTGGGTCTGTTTCATGCTGTGGGAGAGTGGAGATCCTCTATAATGGCCAGTGGGGAACAGTGTGTGATGATAACTGGGACATGAACGATGCTGCTGTGGTGTGCAGACAGTTACAGTGTGGATCAGCCATCCGTGCACCTCATGGAGCTGCCTTTGGTCAAGGTAGTGGTCAGATCTGGCTGGATGAAGTTAATTGTTCAGGAAGTGAAGGAGCCCTCAGACAGTGTTCACACAGTGGATTAGGACAACATGACTGCAATCATGGTGAAGATGCTGGTGTTGTATGTTCAGgTGAGCTGCAGCTGCAGATGCCGACCTTTTCCTTGACCTCAGTACATGCAGCCGTTTCTCCTGGAGAAAGCGTCCAGTTCAGATGCACAGCACCTAAACCTAGATGCAACACTACTGCTGAATTCCAGCTCCTCAGAAACGGACCGCCTGTATCCTCTCAGACACACGAATCAAGTGTGACTTTCAACCTTTCTAATGTAGACGTCTCTTTTCAGGGCAGCTACAGCTGTCTTTACTCCTACCTAAACAACGCTGTCAAATCACCTTTCAGCAGCATTATTACCATCACTGTGGTGGACTTGCAGCAGCCCAGCATTTCTCACAGTTATCCTGACGGGTCTCAGGGGCCGGTGATCACCAGGGGCCACAGTTTCACTATCATCTGTTCAACTCAATCTCAGCATCCTGGAGGCTCTTTTCTCCTGTTCAGAGGATCAGACATCACCGGGACTGAGTCAGATGTTAATCTCTCTTCCTCCTTCTTCTTTCCTGAGGCAGATTACTCACACGAGGGAAACTACAGCTGTGTTTATGAAGTCAGTGTCTCCTCTCGCTCCTTCCGTTCATCTGCCTCTGATCTGCTGCTCATCACTATCACAGcCTCCCTGCTTCCTGTCATTGGTGCTGCAGTGTCAGCTGTGCTGCTCTTGTTGTCTGGTCTCATAATCTTCCTCCTGCTCAAGAGAAGACGACAGCAAAGGAACATGGAAACTCATTTAAAGTGCTCTTTTACGAAAGGTCAAGCTGCATCACGTACTAGCAGAAATGAAGAGGATGATGAGGCTGATTATGAAAATATTGAACTTGATGAAAACATGGATTGTGATGATTCTGAACAGGACTATGTTAATGTGGACTCTGATGAATCTGAACAAGATTATATTAATGTGGACTCTAATCATTTCAAACAGGACAGTGCTGTGGACTCTGATGAATCTGAACAAGATTATGTTAATGTGGACTTAAATCATTCCAACTCAAATGACAGTTGAATATGGTTTATTCTGCTTTTTGCTCTCCAAGAAGATGGGTAACATTTAAGAATACTATTCCTTTCTTACTGCATAACTGATAAGGCATCACTCAGTAAAATAACTATGAAATAACTAGTACTGAACACCTGTCATGTGCTAGGActgtctgttgttttttcttgtcccatgtgctctgtgtgccctactttctgtcctCTGTTGATTGTCTCATTGTTTTCAgatgtgtcttgttaatttagtaatttcctTTGTCCTTTATAAGTTCCAGTTTGTTTCATGTCAAATTGTCCGGTCTCGTCTGTGTATGCGTCTGGTTCCAGTCGGCccgcctgcctgcc

Function

NR:

description
PREDICTED: deleted in malignant brain tumors 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU29090 False 657 lncRNA 0.47 4 12339702 12342331
XM_043235877.1 True 1661 mRNA 0.45 6 12339187 12343872

Neighbor

gene id symbol gene type direction distance location
LOC122342092 LOC107758479 coding downstream 6346 12322244 ~ 12332841 (-)
LOC122336412 LOC107658520,LOC107554095,LOC107582983,LOC107729569,LOC107689640,LOC107737779 coding downstream 19121 12315450 ~ 12320066 (-)
aoc2 aoc2,LOC107658518,LOC107729559,LOC107582984,LOC107689706 coding downstream 38614 12297054 ~ 12300573 (-)
g6pc1b g6pcb,LOC107582985,LOC107729528,LOC107658515,LOC107554093 coding downstream 48203 12288422 ~ 12290984 (-)
kat7a LOC107689642,LOC107554133,LOC107737751,LOC107729527,LOC107582986,LOC107658517,LOC108437993 coding downstream 51311 12279708 ~ 12287876 (-)
rarab rara,rarab,LOC108434941,LOC108276117,LOC108261354,LOC107737746,LOC107695008,LOC107554136,LOC107582978,LOC107689638 coding upstream 1563 12345435 ~ 12447724 (-)
si:dkey-283b1.6 NA coding upstream 149846 12493718 ~ 12498011 (-)
abi3a LOC107758490,LOC107583075,LOC107695026 coding upstream 154902 12498774 ~ 12508792 (-)
LOC122342135 LOC107695140,LOC107758481,LOC107583074 coding upstream 165319 12509191 ~ 12510507 (-)
ccdc103 LOC107758482,LOC107583073,LOC107695153 coding upstream 166737 12510609 ~ 12512465 (-)
LOC122332655 NA non-coding downstream 43764 12294140 ~ 12295423 (-)
LOC122341243 LOC107729463,LOC107658509,LOC107582987 non-coding downstream 68251 12265845 ~ 12270936 (-)
G19518 LOC107729456,LOC107658501,LOC107582995,LOC107554123,LOC107689649,LOC107737759 non-coding downstream 108808 12226575 ~ 12230379 (-)
G19503 NA non-coding downstream 156703 12182258 ~ 12182484 (-)
G19463 NA non-coding downstream 241825 12092899 ~ 12097362 (-)
G19677 LOC107737766 non-coding upstream 520438 12864310 ~ 12886954 (-)
G19672 alkbh7,LOC107723204,LOC107690706 non-coding upstream 556909 12900781 ~ 12902910 (-)
LOC122332187 NA non-coding upstream 728688 13072560 ~ 13072828 (-)
LOC122332138 ighv5-5,ighm,ighv5-4,ighv5-8 non-coding upstream 736198 13080070 ~ 13080621 (-)
G19703 ighv6-1 non-coding upstream 746799 13090671 ~ 13091152 (-)
LOC122341756 NA other downstream 418420 11909775 ~ 11920767 (-)
G19383 NA other downstream 458228 11853748 ~ 11880959 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other downstream 611186 11712820 ~ 11728001 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other downstream 624468 11694272 ~ 11714719 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other downstream 910008 11411985 ~ 11429179 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other upstream 278911 12622783 ~ 12679800 (-)
cacna1aa LOC107690704,LOC107571502 other upstream 338118 12681990 ~ 12763090 (-)
G19676 LOC107690708 other upstream 662124 13005996 ~ 13068190 (-)
G19700 NA other upstream 703169 13047041 ~ 13047494 (-)
gng13b NA other upstream 1442137 13786009 ~ 13792602 (-)

Expression


Co-expression Network