slc16a3a (si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394)


Basic Information

Item Value
gene id slc16a3a
gene name si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13995961 ~ 14002378 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU29750
AAGCGTAACAGGTGACTCGGAAATACGGAAGAATAACGGAGCGCTCAGGCATCGTGAACAAACAGACAATATTTAAGATAACACTCGATTAACCGGATTAAAGATTAAtgcatTAGAGGCTtgtttttacagaaagaaaCACTTATAAATTTGCGGTTATTGCGCGTCAAAACAGTTTCACGAGACGAAAGGGCGtttgtttacaatttaatatttgatcTCGATAAATCAATAAGAGATgaggagatattttgaaagatTGGTATATCTGCTTACTTCTGAA
>XM_043228897.1
caagaaaaggttgggaaccactgcatTAGAGGCTtgtttttacagaaagaaaCACTTATAAATTTGCGGTTATTGCGCGTCAAAACAGTTTCACGAGACGAAAGGGCGtttgtttacaatttaatatttgatcTCGATAAATCAATAAGAGATgaggagatattttgaaagatTGGTATATCTGCTTACTTCTGAATTTCcccaaaatgtataattttcttCACAGAATGCACTATGAGCAGTAGAGCATCATGGGAGGAGTGGCACTGGATGATGGCAGTAGTGGAGTGAAGGCCCCTGATGGTGGCTGGGGTTGGGCTGTGCTCTTTGGTTGCTTCGTCATCACAGGTTTCTCCTATGCCTTTCCCAAGGCTGTCAGTGTTTTCTTCAAGGAGCTGATTAGAGAGTTTGATGTGGGCTACAGTGACACAGCCTGGATCTCCTCCATCCTATTGGCTATGCTTTATGGCACTGGGCCTTTATGCAGCATTTTAGTGAATCGTTTTGGATGCCGTCCAGTGATGTTAGTGGGCGGCCTCTTTGCATCGTTGGGAATGGTCTTGGCATCATTTGCCACAAGCATCATCCACATTTACTTGTGTACAGGAGTCATTACAGGTCTTGGAATGGCTCTGAACTTCCAGCCTTCACTCATTATGTTGAATCGATACTTCAGTGAGAAGCGGCCGCTGGCTAACGGCCTGGCAGCAGCTGGGAGTCCCGTGGCTCTGTGCTGTCTGTCTCCTCTGGGGCAGGTCCTTCAGTATAAATATGGCTGGAGAGGGGGCTTCCTCATCTTGGGAGGGATTCTTCTGAACTGCTGTGCCTGTGGGGCTTTAATGAGGCCTTTGTACCCGCCAAAGAAGTCGGAGGCCGCTGGGATTGAAAACACACCAGAGGACGGTAACGAGAAAGCCAAGCCCAAGCCTAAGCTGCTGGACTTCAGTGTTTTCAGAGACCCGGGCTTTGTCATTTACACAGTCGCTGCCTCCATAATGGTGCTCGGTTTGTTTGTTCCTCCGGTGTTTGTGGTGAGCTATGCTAAAGAGTTGGGAAACGAAGACACAAAATCCGCCCTCCTGCTTACCATTCTGGGTTTCATTGACATTTTCGCACGGCCCACGTGTGGCATTATCGCTGGACTCCAGTGGGTTCGCCCTCGATGCGTCTACCTCTTCAGTTTCGCTCTCATATTCAATGGCACCACAGACCTGGTGGGCTCCCTGGCTAAAGACTACGCCTCTCTGGTGGTGTTCTGCATCTTCTTTGGCATCTCGTACGGCATGGTGGGAGCCCTGCAGTTCGAGGTTCTCATGGCTGTTGTGGGTACAGAGAAGTTCTCGAGTGCCATTGGTTTAGTTCTCCTGCTTGAAGCCATTGCTGTGCTAGTTGGGCCTCCATCTGCTGGGCGCCTTTTGGACTCCACTAAGAAGtacatgtttgttttcctgCTGGCTGGGATTGAGGTTGTGATGTCAGCTTTAGTGCTGGCCATATGCAACTTACTGTTCATAAAGAAGAAGCCTGAGGCACCAGAGACTGCAGAGGCAAAGAATCACTCCAGTACGCCACCTACAGAGGAGCCTCATAAGGCCAATGGAAACTCAGAAAAGAGAGTCAAGAATGTTACGAAGGATCCAAAGGAAGTGGAAACGTTTCTGAAAGATAATGATGAGCAGAATTAAAACGTCAACTGTGGCAGAGGCCGACCTCTGATGCTTAAGAAGAGGTTGAAAGACACAAATAAGAGGAGATTGCTGAGACCTGCAGTGTTGATGTGTATTACTGTGTAGTCCAACGTGATGTCCTGCTAAGTGTGCTACATACTGATAGCGGAGTGTTTCATCAATACAGCTGCACTGCCACAAAGAGAGGTTTAGACAGGCCACTCTCAGGCCCTCGTTTACACTAGTTACGGTTACGCCTGTCGTCTAAACTACTCCGGCGTTTTGAAAATGCTGCAGACCCCGTTTTAGTCTAAAGACCCCGGGGTTGCGTTTCTGTGTAAACAGAGCGAAACGGAGACTTTGGAAAACGATGGCGTGGCTGCCCACATTCTCTCTGCGTATCCTTGACGACCGTGTAAACAATAACATCGCGTAAACGGGGTCTTAATACGTGTAACTCAACACCCCAGATAATCTTTGACTTAAACATTACCAAGGTTAAAGGTGCTGTAAGTGATTATATGATTGGAATTGTATGAAGAAGATAATCTTCTTCACTGAAAACACTGCCCTGAAATATCACACCGATCAGTCAGCGTTGTATGTAACATATTACTAGTAATATGAGATACgtaatcaaataattttaagCTGATTTGGTTTGTTCCCCTCGGTCATGATTTAGAAATGCTGAATTAAAAAGTTTAACCTTGTTACAGCATCTTTAACTAAGTGCAAAATAAACGTCACAGAAGTAAACAGACCTGAACACAGGAACTGAACGTGCGGGCACACTGAAGTCTGATCATATTCATAGATATCAGCAATCATCGGAGATCTGTAGTGTTTCCACTTCTTTAAACGCTTCTGTAATAGTATGCGTCACTATTCACAGACCTCATACACTATGTGAAGTGCTTTGTTTTGTCCGTCGTGAGCGGTGTGGTGACTGTGGACCAATAGCTTTAAGTACACTTCTGATAATGCCATGAGTTCCTGCATAAAGCTCAGTACTGTTACATGCACCGAGGGCCCTACTTCACCTTATGTTCTTTGGTATGTTTCAGTGCTAAAGGACAATATAAgcttagctttttttaatcttagtGGAATACAGCTGTATTAGTCAGTATTAGTTGTACtgtgaatttatattttgacaCTGTACGTTTGTCATCTAAGACTTTTAACTTTTTACCGTTATGCTGAGATTGTCATAGAAAAGTGAAGTAGAGAGCAGGTATCTCTGCATTTATGACTTCATATGAAGGGTCCTACAGCAAGattagcaatatttatttttcacctagtctattttctttctttttttttacaaacctagttttattgcaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattctttatttactGAAATGCACCAAATGCAATACCGAATTAGAAGCCAAATGATAAGTGTTGACAACAATGTTGACAAGCATGCAGTTTGTCCCTTCGTGAAGAAATGAGGTTTGACAGCACTGCCTCCTGgcattggttttaattttataccAGCATCTGGAGGAGACAGCTCTACTATTGGTTAAGATACTTGCCCTGTCAGATATTTGTACTCAAAATACATCCGAGTACAAGGGAAGCTATGAGAAATTTAAACCCAGAATCAGTGTTGCTGCCCTTCCATTTTGCCCGAGTTAGTCTGGGAAACATTTGCAATATTTACTTTAATCTTGCAGACGGCCTGTGTAATTTAATTTCtgtctacttaaaaaaaaaaaaacggctcaATAAATGTTGAACAGAGCA
>XM_043228898.1
GtcggttttctcttttttacttAGCTGCGTCTATAATGTCATACGTGCTCCTAGAAGCGTGTTTCGGTGAACGAATCTGAAATCTGACCATATTTTTAAGCAGTAGAGCATCATGGGAGGAGTGGCACTGGATGATGGCAGTAGTGGAGTGAAGGCCCCTGATGGTGGCTGGGGTTGGGCTGTGCTCTTTGGTTGCTTCGTCATCACAGGTTTCTCCTATGCCTTTCCCAAGGCTGTCAGTGTTTTCTTCAAGGAGCTGATTAGAGAGTTTGATGTGGGCTACAGTGACACAGCCTGGATCTCCTCCATCCTATTGGCTATGCTTTATGGCACTGGGCCTTTATGCAGCATTTTAGTGAATCGTTTTGGATGCCGTCCAGTGATGTTAGTGGGCGGCCTCTTTGCATCGTTGGGAATGGTCTTGGCATCATTTGCCACAAGCATCATCCACATTTACTTGTGTACAGGAGTCATTACAGGTCTTGGAATGGCTCTGAACTTCCAGCCTTCACTCATTATGTTGAATCGATACTTCAGTGAGAAGCGGCCGCTGGCTAACGGCCTGGCAGCAGCTGGGAGTCCCGTGGCTCTGTGCTGTCTGTCTCCTCTGGGGCAGGTCCTTCAGTATAAATATGGCTGGAGAGGGGGCTTCCTCATCTTGGGAGGGATTCTTCTGAACTGCTGTGCCTGTGGGGCTTTAATGAGGCCTTTGTACCCGCCAAAGAAGTCGGAGGCCGCTGGGATTGAAAACACACCAGAGGACGGTAACGAGAAAGCCAAGCCCAAGCCTAAGCTGCTGGACTTCAGTGTTTTCAGAGACCCGGGCTTTGTCATTTACACAGTCGCTGCCTCCATAATGGTGCTCGGTTTGTTTGTTCCTCCGGTGTTTGTGGTGAGCTATGCTAAAGAGTTGGGAAACGAAGACACAAAATCCGCCCTCCTGCTTACCATTCTGGGTTTCATTGACATTTTCGCACGGCCCACGTGTGGCATTATCGCTGGACTCCAGTGGGTTCGCCCTCGATGCGTCTACCTCTTCAGTTTCGCTCTCATATTCAATGGCACCACAGACCTGGTGGGCTCCCTGGCTAAAGACTACGCCTCTCTGGTGGTGTTCTGCATCTTCTTTGGCATCTCGTACGGCATGGTGGGAGCCCTGCAGTTCGAGGTTCTCATGGCTGTTGTGGGTACAGAGAAGTTCTCGAGTGCCATTGGTTTAGTTCTCCTGCTTGAAGCCATTGCTGTGCTAGTTGGGCCTCCATCTGCTGGGCGCCTTTTGGACTCCACTAAGAAGtacatgtttgttttcctgCTGGCTGGGATTGAGGTTGTGATGTCAGCTTTAGTGCTGGCCATATGCAACTTACTGTTCATAAAGAAGAAGCCTGAGGCACCAGAGACTGCAGAGGCAAAGAATCACTCCAGTACGCCACCTACAGAGGAGCCTCATAAGGCCAATGGAAACTCAGAAAAGAGAGTCAAGAATGTTACGAAGGATCCAAAGGAAGTGGAAACGTTTCTGAAAGATAATGATGAGCAGAATTAAAACGTCAACTGTGGCAGAGGCCGACCTCTGATGCTTAAGAAGAGGTTGAAAGACACAAATAAGAGGAGATTGCTGAGACCTGCAGTGTTGATGTGTATTACTGTGTAGTCCAACGTGATGTCCTGCTAAGTGTGCTACATACTGATAGCGGAGTGTTTCATCAATACAGCTGCACTGCCACAAAGAGAGGTTTAGACAGGCCACTCTCAGGCCCTCGTTTACACTAGTTACGGTTACGCCTGTCGTCTAAACTACTCCGGCGTTTTGAAAATGCTGCAGACCCCGTTTTAGTCTAAAGACCCCGGGGTTGCGTTTCTGTGTAAACAGAGCGAAACGGAGACTTTGGAAAACGATGGCGTGGCTGCCCACATTCTCTCTGCGTATCCTTGACGACCGTGTAAACAATAACATCGCGTAAACGGGGTCTTAATACGTGTAACTCAACACCCCAGATAATCTTTGACTTAAACATTACCAAGGTTAAAGGTGCTGTAAGTGATTATATGATTGGAATTGTATGAAGAAGATAATCTTCTTCACTGAAAACACTGCCCTGAAATATCACACCGATCAGTCAGCGTTGTATGTAACATATTACTAGTAATATGAGATACgtaatcaaataattttaagCTGATTTGGTTTGTTCCCCTCGGTCATGATTTAGAAATGCTGAATTAAAAAGTTTAACCTTGTTACAGCATCTTTAACTAAGTGCAAAATAAACGTCACAGAAGTAAACAGACCTGAACACAGGAACTGAACGTGCGGGCACACTGAAGTCTGATCATATTCATAGATATCAGCAATCATCGGAGATCTGTAGTGTTTCCACTTCTTTAAACGCTTCTGTAATAGTATGCGTCACTATTCACAGACCTCATACACTATGTGAAGTGCTTTGTTTTGTCCGTCGTGAGCGGTGTGGTGACTGTGGACCAATAGCTTTAAGTACACTTCTGATAATGCCATGAGTTCCTGCATAAAGCTCAGTACTGTTACATGCACCGAGGGCCCTACTTCACCTTATGTTCTTTGGTATGTTTCAGTGCTAAAGGACAATATAAgcttagctttttttaatcttagtGGAATACAGCTGTATTAGTCAGTATTAGTTGTACtgtgaatttatattttgacaCTGTACGTTTGTCATCTAAGACTTTTAACTTTTTACCGTTATGCTGAGATTGTCATAGAAAAGTGAAGTAGAGAGCAGGTATCTCTGCATTTATGACTTCATATGAAGGGTCCTACAGCAAGattagcaatatttatttttcacctagtctattttctttctttttttttacaaacctagttttattgcaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattctttatttactGAAATGCACCAAATGCAATACCGAATTAGAAGCCAAATGATAAGTGTTGACAACAATGTTGACAAGCATGCAGTTTGTCCCTTCGTGAAGAAATGAGGTTTGACAGCACTGCCTCCTGgcattggttttaattttataccAGCATCTGGAGGAGACAGCTCTACTATTGGTTAAGATACTTGCCCTGTCAGATATTTGTACTCAAAATACATCCGAGTACAAGGGAAGCTATGAGAAATTTAAACCCAGAATCAGTGTTGCTGCCCTTCCATTTTGCCCGAGTTAGTCTGGGAAACATTTGCAATATTTACTTTAATCTTGCAGACGGCCTGTGTAATTTAATTTCtgtctacttaaaaaaaaaaaaacggctcaATAAATGTTGAACAGAGCA

Function

symbol description
slc16a3 Enables RNA binding activity. Predicted to be involved in monocarboxylic acid transport. Located in nuclear membrane and plasma membrane. Part of apical plasma membrane; basolateral plasma membrane; and lateral plasma membrane.

NR:

description
PREDICTED: monocarboxylate transporter 4-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG:

id description
K08180 SLC16A3; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU29750 False 283 lncRNA 0.36 2 13996470 13997081
XM_043228897.1 True 3498 mRNA 0.43 5 13996886 14002378
XM_043228898.1 False 3359 mRNA 0.43 5 13995961 14002378

Neighbor

gene id symbol gene type direction distance location
scpep1 scpep1,LOC107654482,LOC107601266,LOC107590395,LOC107688106 coding upstream 9189 13982254 ~ 13986772 (+)
trnat-cgu NA coding upstream 82267 13913623 ~ 13913694 (+)
crlf3 crlf3,LOC107688102,LOC107654479,LOC107721514,LOC107719981 coding upstream 93372 13888940 ~ 13902589 (+)
traf7 traf7,LOC107601260,LOC107719978,LOC107590399,LOC107654453,LOC107721517 coding upstream 187779 13796853 ~ 13808182 (+)
rpusd1 rpusd1,LOC107720093,LOC107654465,LOC107590456,LOC107688151 coding upstream 226016 13767191 ~ 13769945 (+)
dus1l dus1l,LOC107601270,LOC107654489,LOC107688109,LOC107590391 coding downstream 27127 14029505 ~ 14036025 (+)
zgc:86896 zgc:86896,LOC107654493,LOC107601274,LOC107721506,LOC107719989,LOC107590453,LOC105899990 coding downstream 55266 14057644 ~ 14062454 (+)
wipi1 wipi1,LOC107721503,LOC107654490,LOC107688112,LOC107590389,LOC107719990 coding downstream 60895 14063273 ~ 14073404 (+)
slc16a6b slc16a6b,LOC107721502,LOC107719991,LOC107688113,LOC107654485,LOC107590388 coding downstream 73824 14076202 ~ 14084506 (+)
rgs9a rgs9,rgs9a,LOC107721500,LOC107590386,LOC107719993 coding downstream 99637 14102015 ~ 14111321 (+)
G19963 NA non-coding upstream 52470 13940616 ~ 13943491 (+)
LOC122342149 NA non-coding upstream 75692 13913926 ~ 13920269 (+)
G19891 NA non-coding upstream 177739 13815353 ~ 13818222 (+)
G19890 NA non-coding upstream 203406 13787833 ~ 13792555 (+)
G19788 nsfa,LOC107689618,LOC107709994,LOC107601245 non-coding upstream 552383 13409739 ~ 13443578 (+)
G20009 NA non-coding downstream 97795 14100173 ~ 14101904 (+)
G20057 NA non-coding downstream 146086 14148464 ~ 14150958 (+)
G20113 ramp2,LOC107721488,LOC107601292,LOC107654510,LOC107590449 non-coding downstream 300772 14303150 ~ 14304893 (+)
G20146 NA non-coding downstream 377246 14379624 ~ 14457906 (+)
G20166 NA non-coding downstream 614884 14617262 ~ 14618834 (+)
rbbp6 rbbp6,LOC107689611,LOC107710004,LOC107590402,LOC107601255,LOC107688097,LOC107720072 other upstream 285096 13698537 ~ 13710865 (+)
si:dkey-204f11.64 LOC105898698 other upstream 881105 13112477 ~ 13114856 (+)
LOC122332158 LOC107583070,LOC107737766 other upstream 1008048 12835381 ~ 12987913 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other upstream 1467158 12519837 ~ 12528803 (+)
G19326 NA other upstream 1482240 12511926 ~ 12513721 (+)
G19973 NA other downstream 47112 14049490 ~ 14053032 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other downstream 116089 14118467 ~ 14119570 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other downstream 117807 14120185 ~ 14123128 (+)
abcc1 abcc1,LOC107721490,LOC107654509,LOC107720005,LOC107688147,LOC107601224,LOC107590430 other downstream 253112 14255490 ~ 14273309 (+)
G20148 LOC107721478,LOC107654521,LOC107674594 other downstream 532801 14535179 ~ 14615408 (+)

Expression


Co-expression Network