G20029 (zgc:86896,LOC107654493,LOC107721506,LOC107590453,LOC107719989,LOC107601274)


Basic Information

Item Value
gene id G20029
gene name zgc:86896,LOC107654493,LOC107721506,LOC107590453,LOC107719989,LOC107601274
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14059581 ~ 14060492 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU29815
TCCTTTCCCTGTGTGGCATCTGCTACACTGATGGCGCTGTTGTGGCTAACCCAGGCCAGAGCATCACCAGACGGGGAGAAACAGACGCTGTGTACCCAGCCGCCACACTCTTTATACTCCAGAAGCACCTCTCCAAAGGGCATTTTCGACCCCCAGGGTGTTGGTCCAGGCTTGTCCTCGATGTCCTTGATATATGCAGAAAAAAAACCTGCAGTTCAGATCAGCTGAGCCAGCTGCCAGCAGAACATTATTGGGATGCCAGTCTAGACTCAGAACAGTGGAGTTAATGGGTTTCTTGATATGCTTACTTAGCCACCTATAGAGTCAATCAGGAACAGAGATTGCACAAGAGATGTGGCTATGGATGAGATAATACATATGTGAacatatgtgtatttttttttttgcactttcattTTACAGATTATACAATAGTTGTTTCTGGGCCAAATACATACATCATccaatcataaaaataaatctctgtTTCGAAaaattgacccttatgactggttttgtggtccagggtcacatatatttaGCAACAACTCTCTCAGtcagtaaagaaataaaaaaataaggttaAAAGGTCTTATAAAAGCAGGTCTCACCAGTCATTCTCTTTTTCAAAGTAGCATACTGAAATAAGTTTAGCCCCACTTCCAAGAGCAAACTTGTTCTCGAGTGGTGACCACTTGACACATGTGGCAGCTCGATTAATGCGAACCAGGACCAAAGTCGGCTTCCAAACCCCATCCTTAAGTGTCCATACATAGGCATTCCTATCTGAGGCACAGGTCACTATACGGTTGGACTCTGGGGCCCAGTCAATc

Function

symbol description
zgc:86896 Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton and cytoplasm. Predicted to be part of Arp2/3 protein complex. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ARPC1A (actin related protein 2/3 complex subunit 1A).

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 1A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU29815 True 833 lncRNA 0.44 2 14059581 14060492

Neighbor

gene id symbol gene type direction distance location
prkar1aa prkar1aa,prkar1a,LOC107654492,LOC107721504,LOC107590390,LOC106606198,LOC108274040 coding downstream 2859 14049482 ~ 14056722 (-)
rac3a rac3a,rac3,rac3b,LOC108436959,LOC106610298,LOC100712409 coding downstream 10882 14044308 ~ 14048699 (-)
gps1 gps1,LOC107654488,LOC107721507,LOC107688111 coding downstream 16079 14036320 ~ 14043502 (-)
csnk1da csnk1d,LOC107601268,LOC107590392,LOC107688108,LOC107654491,LOC103024472,LOC108259482,LOC104935249 coding downstream 33511 14003339 ~ 14026070 (-)
engase engase,LOC107654484,LOC107601267,LOC107719983,LOC107590436 coding downstream 65206 13987076 ~ 13994375 (-)
gna13b LOC107654495,LOC107721501,LOC107601276,LOC107688114,LOC107719992,LOC107590387,LOC108438014 coding upstream 24996 14085488 ~ 14101958 (-)
cog1 cog1,LOC107654497,LOC107601277,LOC107721521,LOC107590385,LOC107688115,LOC107719994 coding upstream 51055 14111547 ~ 14119590 (-)
rogdi rogdi,LOC107719995,LOC107688116,LOC107654499,LOC107721519,LOC107601278 coding upstream 61647 14122139 ~ 14126578 (-)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 coding upstream 66311 14126803 ~ 14136702 (-)
ppl ppl,LOC107601282,LOC107654502,LOC107688119,LOC107590382 coding upstream 77880 14138372 ~ 14150970 (-)
LOC122342150 NA non-coding downstream 129304 13917700 ~ 13930277 (-)
G19947 NA non-coding downstream 160649 13897631 ~ 13898932 (-)
G19872 NA non-coding downstream 425796 13633559 ~ 13633785 (-)
G19811 NA non-coding downstream 701792 13357579 ~ 13357789 (-)
G19726 NA non-coding downstream 929973 13125521 ~ 13129608 (-)
G20095 LOC107719998,LOC107601286,LOC107688145,LOC107590379 non-coding upstream 159593 14220085 ~ 14221797 (-)
G20202 NA non-coding upstream 324869 14385361 ~ 14388398 (-)
G20212 NA non-coding upstream 373213 14433705 ~ 14459554 (-)
G20217 LOC107601298,LOC107721528,LOC107590427,LOC107720013,LOC107688135,LOC107654518 non-coding upstream 388983 14449475 ~ 14451028 (-)
G20231 NA non-coding upstream 542702 14603194 ~ 14604214 (-)
G19933 NA other downstream 253603 13805368 ~ 13805978 (-)
gng13b NA other downstream 266979 13786009 ~ 13792602 (-)
G19676 LOC107690708 other downstream 991391 13005996 ~ 13068190 (-)
G19700 NA other downstream 1012087 13047041 ~ 13047494 (-)
cacna1aa LOC107690704,LOC107571502 other downstream 1296491 12681990 ~ 12763090 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other upstream 142438 14202930 ~ 14204350 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other upstream 374655 14435147 ~ 14439541 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 1060314 15120806 ~ 15179359 (-)
LOC122341947 NA other upstream 1081325 15141817 ~ 15145608 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other upstream 1538278 15598770 ~ 15600348 (-)

Expression


Co-expression Network