si:dkeyp-72e1.6 (si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592)


Basic Information

Item Value
gene id si:dkeyp-72e1.6
gene name si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14202930 ~ 14204350 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU29913
TTCGCGCCGCTTACCTATGAAACGAACACAAACCCTTCCAAACCCttcttgtttttcaaaaaaaaggcaataacAAGCGTAAGAGGTGAAGCAGCGTGAAGATGGAGGCAGCGCCGGGCGGTCTCGGGCGCTGTTCCTGCGCGTTCTGGCTCGCGGTGGCTTTCGACGCGCTCGGTCTCGTCATATTACTGCTCGGCGTGTTCGGAGACTTGTTCTTCTACGACTTCTTGATATACGCGGGAGCCATCATCATCTTCCTGAGTCTCATCTGGTGGGTTTTCTGGTACACGGGTAACATCGAGGTGCCACCGAGGAGCTCGAGGACGACGTGGGCTTGCTGAAGAAGGGCAGGGGTTTGGCAGGGGTCGTGAGGAGGTTCTCCAGCCGCCTCTCGAGCGGAATCAGAAACTCCCTCAGGAGAAACGGGGGGCCGCGGGGTCGAGGCGCGGAGCCCGGGCGAGCGAAGCACGGGAGGGATGGCGGTCAAGCGCCGGTGGCTTTTGCCATGAGCTCTCAGGATAACGTGAGCACTGTTTCTGCGACAGTGAGCGGAGGAGACGCTCTCAGGACAGAAACACAGGCCATATGAAGCGCCACTTACAGgtTACAGAAGAGGATATTCAACCACATGGCATTGCCCATTATGCCTTAACAGACTCGTTTTTCTCTTctgttgaaatattattttttttactctggtgttttattaaaaatgtttacaagtgaattacattttgtacgtttttttgatttgattgattatGCGTATTGTGCTTTGTACTATACACTATTGTGAGATTATGCACTGACAAGAATGGCCGTGAcgaaataaacacaattatgtATTTTCCT
>XM_043234929.1
GACGCACCCACCGCTCGATGCCACTCCCTTCCAGGTGAAGCGTCCTTCGCGCCGCTTACCTATGAAACGAACACAAACCCTTCCAAACCCttcttgtttttcaaaaaaaaggcaataacAAGCGTAAGAGGTGAAGCAGCGTGAAGATGGAGGCAGCGCCGGGCGGTCTCGGGCGCTGTTCCTGCGCGTTCTGGCTCGCGGTGGCTTTCGACGCGCTCGGTCTCGTCATATTACTGCTCGGCGTGTTCGGAGACTTGTTCTTCTACGACTTCTTGATATACGCGGGAGCCATCATCATCTTCCTGAGTCTCATCTGGTGGGTTTTCTGGTACACGGGTAACATCGAGGTGCCACAGGAGCTCGAGGACGACGTGGGCTTGCTGAAGAAGGGCAGGGGTTTGGCAGGGGTCGTGAGGAGGTTCTCCAGCCGCCTCTCGAGCGGAATCAGAAACTCCCTCAGGAGAAACGGGGGGCCGCGGGGTCGAGGCGCGGAGCCCGGGCGAGCGAAGCACGGGAGGGATGGCGGTCAAGCGCCGGTGGCTTTTGCCATGAGCTCTCAGGATAACGTGAGCACTGTTTCTGCGACAGTGAGCGGAGGAGACGCTCTCAGGACAGAAACACAGGCCATATGAAGCGCCACTTACAGgtTACAGAAGAGGATATTCAACCACATGGCATTGCCCATTATGCCTTAACAGACTCGTTTTTCTCTTctgttgaaatattattttttttactctggtgttttattaaaaatgtttacaagtgaattacattttgtacgtttttttgatttgattgattatGCGTATTGTGCTTTGTACTATACACTATTGTGAGATTATGCACTGACAAGAATGGCCGTGAcgaaataaacacaattatgtATTTTCCTA

Function

symbol description
si:dkeyp-72e1.6 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM238 (transmembrane protein 238).

NR:

description
PREDICTED: transmembrane protein 238-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU29913 False 852 lncRNA 0.50 2 14202931 14204305
XM_043234929.1 True 896 mRNA 0.51 3 14202930 14204350

Neighbor

gene id symbol gene type direction distance location
rrn3 rrn3,LOC107654503,LOC107601284,LOC107590381,LOC107688121,LOC107721468 coding downstream 750 14195778 ~ 14202180 (-)
ppl ppl,LOC107601282,LOC107654502,LOC107688119,LOC107590382 coding downstream 51960 14138372 ~ 14150970 (-)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 coding downstream 66228 14126803 ~ 14136702 (-)
rogdi rogdi,LOC107719995,LOC107688116,LOC107654499,LOC107721519,LOC107601278 coding downstream 76352 14122139 ~ 14126578 (-)
cog1 cog1,LOC107654497,LOC107601277,LOC107721521,LOC107590385,LOC107688115,LOC107719994 coding downstream 83340 14111547 ~ 14119590 (-)
mpv17l si:dkeyp-72e1.7,LOC107654467,LOC107721477,LOC107720000,LOC107590380,LOC107688122,LOC103040893,LOC108438006 coding upstream 2004 14206354 ~ 14208231 (-)
myh11b myh11b,myh11,LOC107654508,LOC107721492,LOC107601223,LOC107590431 coding upstream 34757 14239107 ~ 14252949 (-)
abcc6b.2 abcc6b.2,LOC107721491,LOC107590377,LOC107720004,LOC107688123,LOC107601225,LOC108437999 coding upstream 69036 14273386 ~ 14292943 (-)
ramp2 LOC107654510,LOC107721488,LOC107601292,LOC107590449 coding upstream 98800 14303150 ~ 14309441 (-)
cntnap1 cntnap1,LOC107721486,LOC107654512,LOC107720006,LOC107601289,LOC107590375,LOC107688128 coding upstream 123856 14328206 ~ 14355988 (-)
G20029 zgc:86896,LOC107654493,LOC107721506,LOC107590453,LOC107719989,LOC107601274 non-coding downstream 142438 14059581 ~ 14060492 (-)
LOC122342150 NA non-coding downstream 272653 13917700 ~ 13930277 (-)
G19947 NA non-coding downstream 303998 13897631 ~ 13898932 (-)
G19872 NA non-coding downstream 569145 13633559 ~ 13633785 (-)
G19811 NA non-coding downstream 845141 13357579 ~ 13357789 (-)
G20095 LOC107719998,LOC107601286,LOC107688145,LOC107590379 non-coding upstream 15735 14220085 ~ 14221797 (-)
G20202 NA non-coding upstream 181011 14385361 ~ 14388398 (-)
G20212 NA non-coding upstream 229355 14433705 ~ 14459554 (-)
G20217 LOC107601298,LOC107721528,LOC107590427,LOC107720013,LOC107688135,LOC107654518 non-coding upstream 245125 14449475 ~ 14451028 (-)
G20231 NA non-coding upstream 398844 14603194 ~ 14604214 (-)
G19933 NA other downstream 396952 13805368 ~ 13805978 (-)
gng13b NA other downstream 410328 13786009 ~ 13792602 (-)
G19676 LOC107690708 other downstream 1134740 13005996 ~ 13068190 (-)
G19700 NA other downstream 1155436 13047041 ~ 13047494 (-)
cacna1aa LOC107690704,LOC107571502 other downstream 1439840 12681990 ~ 12763090 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other upstream 230797 14435147 ~ 14439541 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 916456 15120806 ~ 15179359 (-)
LOC122341947 NA other upstream 937467 15141817 ~ 15145608 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other upstream 1394420 15598770 ~ 15600348 (-)
G20680 LOC101886504,LOC101886427 other upstream 2246790 16451140 ~ 16451800 (-)

Expression


Co-expression Network