G20179


Basic Information

Item Value
gene id G20179
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14972299 ~ 14989992 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU30039
AGAACTACTAATCGGGGTCTCTCATTGTGCTTCTGCTGGTAACGTGACACTTCTTCATAGGTCAGGAATTCTGTGTCGTTCTGGTCAGAAACATTGGCCTCTCCTGAAGAACCACGACGGTCCTTCCGACTTAGACGGAAACTTCTTCTTAAACCGGCTGAGATGGAGTCAACAAAGCAGGTCACAAATCAAAATTCATTCAATATGAacagttttatgtatttatgtattaaaatgttatttattcagttaagaATCCAACCTCATACAGTGCATACAGTTATAATAGAATCATGTGGAAGGCAAAAGTGATTAAACTATTAATTCTGTAGTCAGCTTTAACACTCTTTTAAACTCTTAAGccctattattttatttatattataataacaaagaCAAAACCATAACCTAACCAGTAACCCTGAAACTTCACAATCTTAACTAGTTTCAATCCCAGTGCAACTCCTGTATCATAACTCTTATCTTCACCTCTATCAGTACTTTTATGAGATATGATGTAAAGTGTGTTATTTTATCAGGACATGGAGGTTAATGGTGGACTGTACCTGAGTAAAACTCCCAGGAAAACACCTGGCCACAGGAGGGAGCCACTGCATTACACTTCGAAGAGACTACAATGCGCATTAGACCACCTCACACTTGTGCAGAAGCCACACTCTGCCCTCAACAACTGACCCAAAATCAGCTCTGCAGCTCATACATGCAATCCTGAGGTCAtttagaaatgaatgaaattaaatcctGCATCAGCATTACCCTAAAAGTCGGCCTGTGCATGGAATCTGCACACTTTATAACAGCTCCCATAACTTTTGAGAGGAAACTTGTAGCATGCAAAGAACTTAAATATTTCTAAgtataattaattgttttaaatggaaaagaaagagGAGGACACTTACTGGCAGCTGAAAGCAACAACAAATtatccaaaatatttaataagttgCAAACAGGTTATAtgccaaaaatgttttagatattCGAGATATTTGAAATTTACATATGATTTAGAGATTCCGTGCTGTCGGTAAGTCTGGCTTCTAGACGTTCCCATTGTCAGTGTgagatgattaaaatgattctcGGTCAGTGGTTAAGGTTGAGAGTTGCTATCACACACTTGACTCTGTGAGTGAGTGCACAGCCAATCGTGCAGGGTGGAATGTGCAGAGTGTCCAATAGAAGGGCAGCAGCCTGACAGTGGCTCTGGGGGAAGGGGGTTTAGGGATGAAGGACTAGATAAAGCAGAATACATTCACACAGAGACTGGGCAAGGGAAATTGCTACCTGCCAGAGGGGAGGAAGGTAGGGTAAAATATTCTCGCATTGCTCCAACGTGAACTGAGATTTGGTCAGATTCGAACAAGAGGAAAAGTCTCACTAAGATTCACACCGATTGAGTATTTTTACACGCCGTCACCCTTCTTGggttgttcaaatgtttggggttttcTATTCAAgactctttgatgaatagaaaaagcatttatttaaaatagaaattttgaaaaatatgctGCCGATTCAATGCATCCTTTTATTATgcgtacatttatttaaaaaaaaactgaatggaaACCAATTGGAATAAAAGCGCATATGCCAAGTTACATATTTGtctattaattatatatacttttttaatttgatttgatttgaaaatttGATTTCCATGGGCAGAAATATCACAATAGTAATTTTGCCAAGCAAACAGCAAGAGAATAATAAGCCTAAAGCCTATAAAATAATCActtgggaaaaaataaataaattacagggGGTCAGTGAAAAATTGTCCTGAAAATTTGCTTCGGTGTTTCAAATGTCATAGCAACATTTATTCGCAGCACCCACAGAAAGTCACAGTATCTAATCTTGGCCAAAACCCATCTTCACAGATCATAAGGAAGAGACTTCTGGTGTCGGAGAGAAGTGCAAATATGCAGATGAAAAGCTGTCAGCTTTTTGGTCGTCCCTTCTGACACAGATTTCTGCAGCTGCTACACATTGTGAAAATAACATGATAGCCTATGAATGAAATATCTAACACTATATGAACTGAATAGCGCTTCTTTTTCTTCACTCTTTTAACAGCTCCTCAAATTAGCACCCATTAACTAATGAGACTTGAAACATGCCAGACATGTTGCTAACAGTTCTAACTCAGAGGCATGACAAACcctgtctctcttcttcttATCAGAGTCTGTGAAGAATGCAGAGCATGATTTTGCCTAGAGCagagaatgttttatttgtaagttGGCGCATTGATGTTCTCAACCTCTCCAAATTCACTCCAATATCTCTCCATCACGGACATAATGCACAGCTATATTTTAGCATCGATTTTCATCAAGTGCGAAACAGTAACAATGGACtattagcaaaataaatacataaacaaacaaaagctatactgataaaaaaatatatgaattacaTTATCTTAAATTCATTTGTAATGAAGTATTTAATTATGAGATTGGtactcaaaatgtatttagttttgtgAAATCTAAAGACAGAATAAGGTGAAATGTTTACGAGAAAACAATTTCTGCCCATTGTGTACTCTATTCATCATATACATCTATTTTCCTCAAACCAATACTAAAACTGCACTTATTTCACTTGcagtacataataaaaaaatatgattgtatataagattttttgtttttgaaagacgctcatcaaggctgcatacACTAAATCAAAGctgtaaacaaaaatagcaaCCGGATTTCGCTTTCTCCTCCAAAGGCATCAGTGCACCACAGCAAATTGGTTTTCTCACAGTGAAATATTCTGACTGACCTAAAATTCCCTTCACGCTGCCAAAATAACCCCCCAATCCGGCCTCCCCTCATCAAGGGCTCGGCCATGGCTCTTGGCACAAGAGGCAGGCAGCAATAGAAGCTCACTCAGGCAGAAGGTTAGTACGTTTCAGAGTTAGCAGGCGCTGGGTACAGGAGTGGGCATGCAGGTTCTCACCTATGTACTGTCCATTGAAATAGCCCTCACAGTCACAGTCTTCTGTAGGGAGGCAAGCAGGGAGAGAGGGAGTGAGCAGAGGAGACCAGGAGAGAGGAAGGAGGGCTGCAGAACTACAGTTACAGAGGCAGGTTCAACAGTTAGGCAGGCGGGCGGATGGGCGGCAGccttgtcaccgtcgccgttaaatacctgaccgcgtctctcctcgggagaccggtctcttcccccgtgcatgcacgctggtgtcctcgtgggtccaggaagggtgcgtgaaggagctcgtcccgccgctagacaagcgcgtcgtgggaccccgtacagtccaggcgacgactgcacccggatacggctgacgggccaggatgccgagccgttaaatcccctaaatctctgacgaccggaggaaagaagcgacggagatgccgcggaagaagccgccgcccctcgcgcccccgaacaggagaggggagcgcgtgcgaccgccggactccgccccttacctggaccctgcccccctggaacactacctgaccttccacaatcccagaagcacaacgagggcaccagtttccccttttatttggacaccctgcccccctggaacactacctgaccttccacaatcccagaagcacaacgagggcaccagtttccccttttatttggacacttttccccttggacactttattttgtactatttttgttaataaaaagcctctccgaggcctgacgccacgcccactgtgtctgtcgttggctcctcccgtcacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30039 True 3799 lncRNA 0.42 3 14972299 14989992

Neighbor

gene id symbol gene type direction distance location
asic2 asic2,LOC107654528,LOC107674665,LOC107720021,LOC108411330,LOC107592342 coding upstream 14573 14684646 ~ 14957726 (+)
hrob LOC107721529,LOC107654526,LOC107601306,LOC107720097 coding upstream 293434 14672317 ~ 14678865 (+)
rps11 rps11,LOC107674708,LOC107590366 coding upstream 300740 14669481 ~ 14671559 (+)
LOC122342191 NA coding upstream 301619 14670596 ~ 14670680 (+)
map3k14a LOC107654524,LOC107721479,LOC107601304,LOC107674595,LOC107590367 coding upstream 314823 14642965 ~ 14657476 (+)
kcnj19a si:dkey-106c17.3,LOC107654469,LOC107581800,LOC107737881,LOC107674737,LOC107720030,LOC108432058 coding downstream 39831 15029823 ~ 15050437 (+)
tmem98 tmem98,LOC107674611,LOC107720031,LOC107738157,LOC107654470 coding downstream 102964 15092956 ~ 15099097 (+)
zgc:100868 LOC107654462,LOC107738142,LOC107581796 coding downstream 260542 15250534 ~ 15257035 (+)
aldoaa aldoaa,aldoab,LOC107720037,LOC107674678,LOC107581735,LOC107689930 coding downstream 290736 15280728 ~ 15285025 (+)
cln3 cln3,LOC107591583,LOC107737814,LOC107720039,LOC107674677,LOC107654539,LOC107581771 coding downstream 297616 15287608 ~ 15292909 (+)
G20183 NA non-coding upstream 638 14971012 ~ 14971661 (+)
G20180 NA non-coding upstream 3014 14920245 ~ 14969285 (+)
LOC122338121 NA non-coding upstream 305247 14664842 ~ 14667052 (+)
G20188 NA non-coding downstream 237 14990229 ~ 14993037 (+)
G20269 NA non-coding downstream 139689 15129681 ~ 15138900 (+)
G20415 NA non-coding downstream 597220 15587212 ~ 15588809 (+)
LOC122334397 NA non-coding downstream 724740 15714732 ~ 15727870 (+)
LOC122334400 NA non-coding downstream 730255 15720247 ~ 15721303 (+)
G20172 rps11,LOC107674708 other upstream 300731 14664919 ~ 14671568 (+)
G20167 NA other upstream 349441 14618994 ~ 14622858 (+)
G20148 LOC107721478,LOC107654521,LOC107674594 other upstream 356891 14535179 ~ 14615408 (+)
abcc1 abcc1,LOC107721490,LOC107654509,LOC107720005,LOC107688147,LOC107601224,LOC107590430 other upstream 698990 14255490 ~ 14273309 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other upstream 849171 14120185 ~ 14123128 (+)
G20286 LOC107581737,LOC107654534 other downstream 159120 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other downstream 178346 15168338 ~ 15169258 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other downstream 279808 15269800 ~ 15280113 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other downstream 716944 15706936 ~ 15744194 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 1189628 16179620 ~ 16207846 (+)

Expression


Co-expression Network